Hb_150651_020

Information

Type -
Description -
Location Contig150651: 6744-11383
Sequence    

Annotation

kegg
ID rcu:RCOM_1034300
description Periplasmic beta-glucosidase precursor, putative (EC:3.2.1.21)
nr
ID XP_002513892.1
description Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q9SGZ5
description Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2
trembl
ID B9RJH3
description Periplasmic beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1034300 PE=4 SV=1
Gene Ontology
ID GO:0009505
description probable beta-d-xylosidase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12687: 6766-11359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150651_020 0.0 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_001001_120 0.0871861869 - - protein phosphatase, putative [Ricinus communis]
3 Hb_001597_020 0.09128582 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
4 Hb_004705_070 0.108721878 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
5 Hb_126933_020 0.1145830739 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
6 Hb_004635_070 0.1232876816 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
7 Hb_007894_190 0.1286766262 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
8 Hb_001365_030 0.1307881338 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
9 Hb_050847_040 0.1311726887 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
10 Hb_000009_020 0.1354809519 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
11 Hb_003894_060 0.1464208042 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000056_310 0.1467043944 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
13 Hb_001953_100 0.147830174 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
14 Hb_000454_100 0.1507306793 - - aldo-keto reductase, putative [Ricinus communis]
15 Hb_164926_010 0.1538573357 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
16 Hb_003683_030 0.1547519054 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
17 Hb_003416_020 0.1551449986 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
18 Hb_002999_030 0.1555532937 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
19 Hb_002498_300 0.1555755369 - - BnaC04g50140D [Brassica napus]
20 Hb_001689_050 0.1566810087 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]

Gene co-expression network

sample Hb_150651_020 Hb_150651_020 Hb_001001_120 Hb_001001_120 Hb_150651_020--Hb_001001_120 Hb_001597_020 Hb_001597_020 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_150651_020--Hb_126933_020 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_001365_030 Hb_001365_030 Hb_001001_120--Hb_001365_030 Hb_001001_120--Hb_001597_020 Hb_001001_120--Hb_004635_070 Hb_002942_140 Hb_002942_140 Hb_001001_120--Hb_002942_140 Hb_003175_070 Hb_003175_070 Hb_001001_120--Hb_003175_070 Hb_001597_020--Hb_004705_070 Hb_009692_040 Hb_009692_040 Hb_001597_020--Hb_009692_040 Hb_164926_010 Hb_164926_010 Hb_001597_020--Hb_164926_010 Hb_001597_020--Hb_001365_030 Hb_050847_040 Hb_050847_040 Hb_004705_070--Hb_050847_040 Hb_004705_070--Hb_126933_020 Hb_010683_030 Hb_010683_030 Hb_004705_070--Hb_010683_030 Hb_003894_060 Hb_003894_060 Hb_004705_070--Hb_003894_060 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_003416_020 Hb_003416_020 Hb_126933_020--Hb_003416_020 Hb_005488_190 Hb_005488_190 Hb_126933_020--Hb_005488_190 Hb_004208_090 Hb_004208_090 Hb_126933_020--Hb_004208_090 Hb_126933_020--Hb_001365_030 Hb_001953_100 Hb_001953_100 Hb_004635_070--Hb_001953_100 Hb_004635_070--Hb_007894_190 Hb_000009_020 Hb_000009_020 Hb_004635_070--Hb_000009_020 Hb_004635_070--Hb_050847_040 Hb_007894_190--Hb_164926_010 Hb_000224_220 Hb_000224_220 Hb_007894_190--Hb_000224_220 Hb_000803_220 Hb_000803_220 Hb_007894_190--Hb_000803_220 Hb_001689_050 Hb_001689_050 Hb_007894_190--Hb_001689_050 Hb_007894_190--Hb_000009_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73997 3.89384 37.5145 17.4858 6.31673 4.59121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.762625 0.906828 0.814166 9.23308 31.8604

CAGE analysis