Hb_160256_010

Information

Type -
Description -
Location Contig160256: 1031-2631
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14349: 1503-2162 , PASA_asmbl_14351: 2300-2502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160256_010 0.0 - - -
2 Hb_001195_640 0.1012484806 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
3 Hb_000920_010 0.1087150071 - - hypothetical protein PRUPE_ppa013940mg [Prunus persica]
4 Hb_000181_060 0.1158991216 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
5 Hb_002284_210 0.1196250756 - - PREDICTED: protein canopy-1 [Jatropha curcas]
6 Hb_030545_010 0.1198803714 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
7 Hb_000140_440 0.1248436572 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
8 Hb_004324_390 0.1265096687 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
9 Hb_004221_030 0.1273801402 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
10 Hb_000905_120 0.1282748876 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
11 Hb_002027_320 0.1285957573 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
12 Hb_006816_190 0.1293816601 - - calreticulin family protein [Populus trichocarpa]
13 Hb_004586_430 0.1294123755 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
14 Hb_006816_100 0.1294842117 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
15 Hb_004994_080 0.1304542146 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001022_030 0.1320400692 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
17 Hb_000103_120 0.1323105102 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
18 Hb_000442_040 0.1323228429 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
19 Hb_000364_170 0.1358987315 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
20 Hb_006555_040 0.1375253572 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]

Gene co-expression network

sample Hb_160256_010 Hb_160256_010 Hb_001195_640 Hb_001195_640 Hb_160256_010--Hb_001195_640 Hb_000920_010 Hb_000920_010 Hb_160256_010--Hb_000920_010 Hb_000181_060 Hb_000181_060 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_030545_010 Hb_030545_010 Hb_160256_010--Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_160256_010--Hb_000140_440 Hb_001268_340 Hb_001268_340 Hb_001195_640--Hb_001268_340 Hb_001053_190 Hb_001053_190 Hb_001195_640--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_010812_070 Hb_010812_070 Hb_001195_640--Hb_010812_070 Hb_004586_430 Hb_004586_430 Hb_000920_010--Hb_004586_430 Hb_000108_050 Hb_000108_050 Hb_000920_010--Hb_000108_050 Hb_156850_100 Hb_156850_100 Hb_000920_010--Hb_156850_100 Hb_160271_010 Hb_160271_010 Hb_000920_010--Hb_160271_010 Hb_022693_130 Hb_022693_130 Hb_000920_010--Hb_022693_130 Hb_004994_080 Hb_004994_080 Hb_000181_060--Hb_004994_080 Hb_000284_130 Hb_000284_130 Hb_000181_060--Hb_000284_130 Hb_000194_010 Hb_000194_010 Hb_000181_060--Hb_000194_010 Hb_007263_010 Hb_007263_010 Hb_000181_060--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000181_060--Hb_002027_320 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490 Hb_002284_210--Hb_006816_100 Hb_003760_030 Hb_003760_030 Hb_002284_210--Hb_003760_030 Hb_002874_180 Hb_002874_180 Hb_002284_210--Hb_002874_180 Hb_010098_020 Hb_010098_020 Hb_002284_210--Hb_010098_020 Hb_143766_020 Hb_143766_020 Hb_002284_210--Hb_143766_020 Hb_002686_080 Hb_002686_080 Hb_002284_210--Hb_002686_080 Hb_030545_010--Hb_000140_440 Hb_003874_010 Hb_003874_010 Hb_030545_010--Hb_003874_010 Hb_030545_010--Hb_007263_010 Hb_006555_040 Hb_006555_040 Hb_030545_010--Hb_006555_040 Hb_004221_030 Hb_004221_030 Hb_030545_010--Hb_004221_030 Hb_000140_440--Hb_006555_040 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000140_440--Hb_000181_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.8642 4.1844 33.6364 17.627 5.82175 7.71368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.618 5.89724 4.48257 3.44679 12.9548

CAGE analysis