Hb_030545_010

Information

Type -
Description -
Location Contig30545: 35407-37062
Sequence    

Annotation

kegg
ID tcc:TCM_014724
description ARM repeat superfamily protein isoform 1
nr
ID XP_012090618.1
description PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067JIA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26389 PE=4 SV=1
Gene Ontology
ID GO:0005515
description arm repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32227: 35254-37355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030545_010 0.0 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
2 Hb_000140_440 0.1190080552 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
3 Hb_160256_010 0.1198803714 - - -
4 Hb_003874_010 0.1229256721 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
5 Hb_007263_010 0.1265738207 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_006555_040 0.1280256223 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
7 Hb_004221_030 0.1313392509 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
8 Hb_002027_320 0.131890492 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
9 Hb_005217_030 0.1323929579 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
10 Hb_143766_020 0.1332830491 - - putative phospholipase A2 [Gossypium arboreum]
11 Hb_011381_040 0.1348676823 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
12 Hb_000905_120 0.1377264872 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
13 Hb_001123_110 0.1381493794 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000392_450 0.139867372 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
15 Hb_000211_040 0.140830324 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
16 Hb_000538_130 0.1430533367 - - phytoene synthase 2 [Manihot esculenta]
17 Hb_000012_270 0.1436516821 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
18 Hb_007451_040 0.1498517789 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
19 Hb_001195_640 0.1500716614 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
20 Hb_001301_330 0.150110486 - - OTU-like cysteine protease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_030545_010 Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_030545_010--Hb_000140_440 Hb_160256_010 Hb_160256_010 Hb_030545_010--Hb_160256_010 Hb_003874_010 Hb_003874_010 Hb_030545_010--Hb_003874_010 Hb_007263_010 Hb_007263_010 Hb_030545_010--Hb_007263_010 Hb_006555_040 Hb_006555_040 Hb_030545_010--Hb_006555_040 Hb_004221_030 Hb_004221_030 Hb_030545_010--Hb_004221_030 Hb_000140_440--Hb_006555_040 Hb_004994_080 Hb_004994_080 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_001195_640 Hb_001195_640 Hb_160256_010--Hb_001195_640 Hb_000920_010 Hb_000920_010 Hb_160256_010--Hb_000920_010 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_160256_010--Hb_000140_440 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_003430_040 Hb_003430_040 Hb_003874_010--Hb_003430_040 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_000300_710 Hb_000300_710 Hb_003874_010--Hb_000300_710 Hb_007263_010--Hb_007451_040 Hb_007263_010--Hb_004994_080 Hb_007263_010--Hb_002027_320 Hb_007263_010--Hb_000392_450 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_006555_040--Hb_004994_080 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_006555_040--Hb_011386_050 Hb_084230_010 Hb_084230_010 Hb_004221_030--Hb_084230_010 Hb_004221_030--Hb_002027_320 Hb_002783_220 Hb_002783_220 Hb_004221_030--Hb_002783_220 Hb_004221_030--Hb_160256_010 Hb_004221_030--Hb_003874_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44465 3.73034 21.5741 8.86105 4.66551 2.92612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34677 3.29141 3.30986 0.892245 6.86659

CAGE analysis