Hb_001195_640

Information

Type -
Description -
Location Contig1195: 441461-444503
Sequence    

Annotation

kegg
ID rcu:RCOM_1593720
description hypothetical protein
nr
ID XP_012071778.1
description PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1V1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05864: 441275-444477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_640 0.0 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
2 Hb_160256_010 0.1012484806 - - -
3 Hb_001268_340 0.1208113681 - - Actin, putative [Ricinus communis]
4 Hb_001053_190 0.1216450942 - - ADP,ATP carrier protein, putative [Ricinus communis]
5 Hb_003540_050 0.1218730695 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
6 Hb_006816_100 0.1222408154 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
7 Hb_010812_070 0.1227485705 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
8 Hb_002686_080 0.1238147113 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
9 Hb_014231_020 0.1245328776 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
10 Hb_004032_160 0.1271726454 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
11 Hb_000703_160 0.1274363097 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
12 Hb_002284_210 0.1282431612 - - PREDICTED: protein canopy-1 [Jatropha curcas]
13 Hb_004712_190 0.1295458251 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
14 Hb_011381_040 0.1314498597 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
15 Hb_001123_110 0.1349930333 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000186_300 0.138307562 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
17 Hb_005144_210 0.138782445 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000364_170 0.1388049474 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
19 Hb_004324_390 0.1404178156 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
20 Hb_000340_130 0.1408309701 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_640 Hb_001195_640 Hb_160256_010 Hb_160256_010 Hb_001195_640--Hb_160256_010 Hb_001268_340 Hb_001268_340 Hb_001195_640--Hb_001268_340 Hb_001053_190 Hb_001053_190 Hb_001195_640--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_010812_070 Hb_010812_070 Hb_001195_640--Hb_010812_070 Hb_000920_010 Hb_000920_010 Hb_160256_010--Hb_000920_010 Hb_000181_060 Hb_000181_060 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_030545_010 Hb_030545_010 Hb_160256_010--Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_160256_010--Hb_000140_440 Hb_000656_300 Hb_000656_300 Hb_001268_340--Hb_000656_300 Hb_001268_340--Hb_003540_050 Hb_004032_160 Hb_004032_160 Hb_001268_340--Hb_004032_160 Hb_000072_300 Hb_000072_300 Hb_001268_340--Hb_000072_300 Hb_004117_190 Hb_004117_190 Hb_001268_340--Hb_004117_190 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_016448_010 Hb_016448_010 Hb_001053_190--Hb_016448_010 Hb_003540_050--Hb_000072_300 Hb_003540_050--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_001277_280 Hb_001277_280 Hb_006816_100--Hb_001277_280 Hb_006816_100--Hb_002284_210 Hb_003760_030 Hb_003760_030 Hb_006816_100--Hb_003760_030 Hb_001517_050 Hb_001517_050 Hb_006816_100--Hb_001517_050 Hb_002485_030 Hb_002485_030 Hb_006816_100--Hb_002485_030 Hb_065755_030 Hb_065755_030 Hb_006816_100--Hb_065755_030 Hb_003050_260 Hb_003050_260 Hb_010812_070--Hb_003050_260 Hb_003001_090 Hb_003001_090 Hb_010812_070--Hb_003001_090 Hb_000987_040 Hb_000987_040 Hb_010812_070--Hb_000987_040 Hb_000331_140 Hb_000331_140 Hb_010812_070--Hb_000331_140 Hb_000369_010 Hb_000369_010 Hb_010812_070--Hb_000369_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.107 8.82077 46.6961 28.9559 8.72481 6.07395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4078 8.57549 5.65542 8.1229 11.8154

CAGE analysis