Hb_004032_160

Information

Type -
Description -
Location Contig4032: 178176-180987
Sequence    

Annotation

kegg
ID cic:CICLE_v10001709mg
description hypothetical protein
nr
ID XP_012073518.1
description PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID A0A067KKH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07997 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39999: 178243-180959
cDNA
(Sanger)
(ID:Location)		 013_J18.ab1: 178243-179212 , 019_O19.ab1: 178243-179199 , 032_F01.ab1: 178243-179231 , 040_L16.ab1: 178243-179321

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_160 0.0 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
2 Hb_005784_070 0.1068686881 - - PREDICTED: protein TONSOKU isoform X2 [Jatropha curcas]
3 Hb_001268_340 0.1214494259 - - Actin, putative [Ricinus communis]
4 Hb_001519_040 0.1220724374 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
5 Hb_001195_640 0.1271726454 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
6 Hb_000030_160 0.134415218 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
7 Hb_001053_190 0.1389555729 - - ADP,ATP carrier protein, putative [Ricinus communis]
8 Hb_004003_030 0.1461894317 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002498_240 0.1469012706 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
10 Hb_002686_080 0.148462074 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
11 Hb_006588_160 0.1536378771 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_016347_020 0.1540445526 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
13 Hb_010942_020 0.1547096893 - - conserved hypothetical protein [Ricinus communis]
14 Hb_016448_010 0.1547743628 - - Protein MYG1, putative [Ricinus communis]
15 Hb_000000_330 0.1552567935 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
16 Hb_026234_010 0.1554469255 - - choline monooxygenase, putative [Ricinus communis]
17 Hb_002485_030 0.1562241335 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
18 Hb_160256_010 0.1572286797 - - -
19 Hb_014231_020 0.1572944282 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
20 Hb_004013_030 0.158054813 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]

Gene co-expression network

sample Hb_004032_160 Hb_004032_160 Hb_005784_070 Hb_005784_070 Hb_004032_160--Hb_005784_070 Hb_001268_340 Hb_001268_340 Hb_004032_160--Hb_001268_340 Hb_001519_040 Hb_001519_040 Hb_004032_160--Hb_001519_040 Hb_001195_640 Hb_001195_640 Hb_004032_160--Hb_001195_640 Hb_000030_160 Hb_000030_160 Hb_004032_160--Hb_000030_160 Hb_001053_190 Hb_001053_190 Hb_004032_160--Hb_001053_190 Hb_000913_030 Hb_000913_030 Hb_005784_070--Hb_000913_030 Hb_005784_070--Hb_001053_190 Hb_006120_040 Hb_006120_040 Hb_005784_070--Hb_006120_040 Hb_016448_010 Hb_016448_010 Hb_005784_070--Hb_016448_010 Hb_004712_190 Hb_004712_190 Hb_005784_070--Hb_004712_190 Hb_000656_300 Hb_000656_300 Hb_001268_340--Hb_000656_300 Hb_003540_050 Hb_003540_050 Hb_001268_340--Hb_003540_050 Hb_001268_340--Hb_001195_640 Hb_000072_300 Hb_000072_300 Hb_001268_340--Hb_000072_300 Hb_004117_190 Hb_004117_190 Hb_001268_340--Hb_004117_190 Hb_006588_160 Hb_006588_160 Hb_001519_040--Hb_006588_160 Hb_026234_010 Hb_026234_010 Hb_001519_040--Hb_026234_010 Hb_000154_050 Hb_000154_050 Hb_001519_040--Hb_000154_050 Hb_001519_040--Hb_016448_010 Hb_000098_240 Hb_000098_240 Hb_001519_040--Hb_000098_240 Hb_001824_030 Hb_001824_030 Hb_001519_040--Hb_001824_030 Hb_160256_010 Hb_160256_010 Hb_001195_640--Hb_160256_010 Hb_001195_640--Hb_001053_190 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_010812_070 Hb_010812_070 Hb_001195_640--Hb_010812_070 Hb_000030_160--Hb_005784_070 Hb_000883_170 Hb_000883_170 Hb_000030_160--Hb_000883_170 Hb_000009_220 Hb_000009_220 Hb_000030_160--Hb_000009_220 Hb_004003_030 Hb_004003_030 Hb_000030_160--Hb_004003_030 Hb_007793_050 Hb_007793_050 Hb_000030_160--Hb_007793_050 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_001053_190--Hb_016448_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.0177 20.0933 77.1227 53.2757 8.45589 18.101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8359 8.76293 12.1681 19.9701 24.1097

CAGE analysis