Hb_007793_050

Information

Type -
Description -
Location Contig7793: 50119-51081
Sequence    

Annotation

kegg
ID rcu:RCOM_0812260
description hypothetical protein
nr
ID XP_002518716.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FH92
description Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
trembl
ID B9RYD2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0812260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57884: 49877-51024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007793_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004003_030 0.1604125286 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001268_340 0.1628914252 - - Actin, putative [Ricinus communis]
4 Hb_004032_160 0.1637528848 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
5 Hb_001148_060 0.1649617906 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
6 Hb_000030_160 0.1704166968 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
7 Hb_002903_100 0.1722809104 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
8 Hb_009808_010 0.1744708153 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
9 Hb_007164_030 0.1759686588 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
10 Hb_012940_030 0.1779510254 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
11 Hb_001347_050 0.1782938293 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_001053_190 0.1793484831 - - ADP,ATP carrier protein, putative [Ricinus communis]
13 Hb_000258_040 0.1805117246 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
14 Hb_000656_300 0.1827704166 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
15 Hb_000787_080 0.1829251998 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
16 Hb_000370_070 0.1876237526 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
17 Hb_000260_490 0.1879855964 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
18 Hb_002686_160 0.1883181789 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Populus euphratica]
19 Hb_021409_070 0.1893414072 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
20 Hb_000003_680 0.1901836905 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]

Gene co-expression network

sample Hb_007793_050 Hb_007793_050 Hb_004003_030 Hb_004003_030 Hb_007793_050--Hb_004003_030 Hb_001268_340 Hb_001268_340 Hb_007793_050--Hb_001268_340 Hb_004032_160 Hb_004032_160 Hb_007793_050--Hb_004032_160 Hb_001148_060 Hb_001148_060 Hb_007793_050--Hb_001148_060 Hb_000030_160 Hb_000030_160 Hb_007793_050--Hb_000030_160 Hb_002903_100 Hb_002903_100 Hb_007793_050--Hb_002903_100 Hb_000566_050 Hb_000566_050 Hb_004003_030--Hb_000566_050 Hb_001799_160 Hb_001799_160 Hb_004003_030--Hb_001799_160 Hb_000787_080 Hb_000787_080 Hb_004003_030--Hb_000787_080 Hb_000003_680 Hb_000003_680 Hb_004003_030--Hb_000003_680 Hb_021576_150 Hb_021576_150 Hb_004003_030--Hb_021576_150 Hb_000318_220 Hb_000318_220 Hb_004003_030--Hb_000318_220 Hb_000656_300 Hb_000656_300 Hb_001268_340--Hb_000656_300 Hb_003540_050 Hb_003540_050 Hb_001268_340--Hb_003540_050 Hb_001195_640 Hb_001195_640 Hb_001268_340--Hb_001195_640 Hb_001268_340--Hb_004032_160 Hb_000072_300 Hb_000072_300 Hb_001268_340--Hb_000072_300 Hb_004117_190 Hb_004117_190 Hb_001268_340--Hb_004117_190 Hb_005784_070 Hb_005784_070 Hb_004032_160--Hb_005784_070 Hb_001519_040 Hb_001519_040 Hb_004032_160--Hb_001519_040 Hb_004032_160--Hb_001195_640 Hb_004032_160--Hb_000030_160 Hb_001053_190 Hb_001053_190 Hb_004032_160--Hb_001053_190 Hb_002759_100 Hb_002759_100 Hb_001148_060--Hb_002759_100 Hb_005305_120 Hb_005305_120 Hb_001148_060--Hb_005305_120 Hb_172632_130 Hb_172632_130 Hb_001148_060--Hb_172632_130 Hb_021409_070 Hb_021409_070 Hb_001148_060--Hb_021409_070 Hb_000270_830 Hb_000270_830 Hb_001148_060--Hb_000270_830 Hb_000030_160--Hb_005784_070 Hb_000883_170 Hb_000883_170 Hb_000030_160--Hb_000883_170 Hb_000009_220 Hb_000009_220 Hb_000030_160--Hb_000009_220 Hb_000030_160--Hb_004003_030 Hb_009808_010 Hb_009808_010 Hb_002903_100--Hb_009808_010 Hb_000074_100 Hb_000074_100 Hb_002903_100--Hb_000074_100 Hb_001347_050 Hb_001347_050 Hb_002903_100--Hb_001347_050 Hb_001847_050 Hb_001847_050 Hb_002903_100--Hb_001847_050 Hb_012940_030 Hb_012940_030 Hb_002903_100--Hb_012940_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4601 16.5348 27.9302 33.5973 3.55269 2.32637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5467 3.8438 8.97467 8.15657 18.837

CAGE analysis