Hb_009808_010

Information

Type -
Description -
Location Contig9808: 7654-12123
Sequence    

Annotation

kegg
ID tcc:TCM_038452
description Leucine-rich repeat protein kinase family protein isoform 1
nr
ID XP_007013912.1
description Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
swissprot
ID Q0WVM4
description Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1
trembl
ID A0A061GPS7
description Leucine-rich repeat protein kinase family protein isoform 1 OS=Theobroma cacao GN=TCM_038452 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g30520

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64395: 7937-9788 , PASA_asmbl_64396: 8454-8745 , PASA_asmbl_64397: 10337-12074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009808_010 0.0 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
2 Hb_002217_320 0.1321440849 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
3 Hb_000042_110 0.1366977768 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
4 Hb_006925_050 0.1373193224 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
5 Hb_006829_070 0.1388697164 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
6 Hb_008119_030 0.1392985757 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
7 Hb_001847_050 0.139561329 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
8 Hb_003605_040 0.1475044214 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
9 Hb_000260_490 0.1481466254 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
10 Hb_003964_080 0.149719876 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
11 Hb_005357_110 0.1500071122 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
12 Hb_002498_240 0.1502621993 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
13 Hb_000915_130 0.1549720974 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
14 Hb_007919_110 0.1551469326 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
15 Hb_002026_020 0.1586429596 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
16 Hb_000134_120 0.1586949736 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
17 Hb_012762_060 0.1590275544 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
18 Hb_001268_340 0.1592146773 - - Actin, putative [Ricinus communis]
19 Hb_001347_050 0.1599631934 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_001195_130 0.1613745455 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009808_010 Hb_009808_010 Hb_002217_320 Hb_002217_320 Hb_009808_010--Hb_002217_320 Hb_000042_110 Hb_000042_110 Hb_009808_010--Hb_000042_110 Hb_006925_050 Hb_006925_050 Hb_009808_010--Hb_006925_050 Hb_006829_070 Hb_006829_070 Hb_009808_010--Hb_006829_070 Hb_008119_030 Hb_008119_030 Hb_009808_010--Hb_008119_030 Hb_001847_050 Hb_001847_050 Hb_009808_010--Hb_001847_050 Hb_012762_060 Hb_012762_060 Hb_002217_320--Hb_012762_060 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_003680_030 Hb_003680_030 Hb_002217_320--Hb_003680_030 Hb_002217_320--Hb_006829_070 Hb_000260_490 Hb_000260_490 Hb_000042_110--Hb_000260_490 Hb_001847_060 Hb_001847_060 Hb_000042_110--Hb_001847_060 Hb_000915_130 Hb_000915_130 Hb_000042_110--Hb_000915_130 Hb_011930_100 Hb_011930_100 Hb_000042_110--Hb_011930_100 Hb_000968_060 Hb_000968_060 Hb_000042_110--Hb_000968_060 Hb_001582_020 Hb_001582_020 Hb_000042_110--Hb_001582_020 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006925_050--Hb_006829_070 Hb_006925_050--Hb_001847_050 Hb_006829_070--Hb_012762_060 Hb_002026_020 Hb_002026_020 Hb_006829_070--Hb_002026_020 Hb_006829_070--Hb_003680_030 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_003605_040 Hb_003605_040 Hb_008119_030--Hb_003605_040 Hb_008119_030--Hb_002026_020 Hb_009222_070 Hb_009222_070 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_071781_010 Hb_071781_010 Hb_008119_030--Hb_071781_010 Hb_012807_150 Hb_012807_150 Hb_001847_050--Hb_012807_150 Hb_001195_130 Hb_001195_130 Hb_001847_050--Hb_001195_130 Hb_001847_050--Hb_004730_020 Hb_000342_170 Hb_000342_170 Hb_001847_050--Hb_000342_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16612 4.09415 7.2402 11.4993 1.63852 0.841729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01168 1.04324 0.818352 1.00194 3.15397

CAGE analysis