Hb_071781_010

Information

Type -
Description -
Location Contig71781: 263-551
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13190g
description POPTRDRAFT_769624; hypothetical protein
nr
ID XP_002314849.2
description hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
swissprot
ID Q9CR50
description RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1
trembl
ID B9HWF6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13190g PE=4 SV=2
Gene Ontology
ID GO:0008270
description zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071781_010 0.0 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
2 Hb_008119_030 0.159483025 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
3 Hb_000742_190 0.1679417155 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002900_100 0.1788431581 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
5 Hb_002675_090 0.1819247834 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003605_040 0.1821887221 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
7 Hb_000808_120 0.1839740456 - - -
8 Hb_013834_010 0.1905282584 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
9 Hb_000668_060 0.1909665196 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
10 Hb_002026_020 0.1972289323 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
11 Hb_000320_050 0.1994960862 - - bcr-associated protein, bap, putative [Ricinus communis]
12 Hb_182249_010 0.203789645 - - -
13 Hb_000816_190 0.2066970647 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003305_030 0.2094055939 - - -
15 Hb_066514_010 0.2137271547 - - hypothetical protein RCOM_0204720 [Ricinus communis]
16 Hb_003688_010 0.217628386 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
17 Hb_002250_050 0.217851636 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
18 Hb_102437_010 0.2179720338 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
19 Hb_010488_040 0.2188572451 - - PREDICTED: phosphomannomutase [Populus euphratica]
20 Hb_186247_010 0.2190871537 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_071781_010 Hb_071781_010 Hb_008119_030 Hb_008119_030 Hb_071781_010--Hb_008119_030 Hb_000742_190 Hb_000742_190 Hb_071781_010--Hb_000742_190 Hb_002900_100 Hb_002900_100 Hb_071781_010--Hb_002900_100 Hb_002675_090 Hb_002675_090 Hb_071781_010--Hb_002675_090 Hb_003605_040 Hb_003605_040 Hb_071781_010--Hb_003605_040 Hb_000808_120 Hb_000808_120 Hb_071781_010--Hb_000808_120 Hb_008119_030--Hb_003605_040 Hb_009808_010 Hb_009808_010 Hb_008119_030--Hb_009808_010 Hb_002026_020 Hb_002026_020 Hb_008119_030--Hb_002026_020 Hb_009222_070 Hb_009222_070 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_010488_040 Hb_010488_040 Hb_000742_190--Hb_010488_040 Hb_000742_190--Hb_008119_030 Hb_000742_190--Hb_003605_040 Hb_002818_050 Hb_002818_050 Hb_000742_190--Hb_002818_050 Hb_002498_240 Hb_002498_240 Hb_000742_190--Hb_002498_240 Hb_066514_010 Hb_066514_010 Hb_002900_100--Hb_066514_010 Hb_002490_030 Hb_002490_030 Hb_002900_100--Hb_002490_030 Hb_000816_190 Hb_000816_190 Hb_002900_100--Hb_000816_190 Hb_002900_100--Hb_002675_090 Hb_011918_010 Hb_011918_010 Hb_002900_100--Hb_011918_010 Hb_006907_050 Hb_006907_050 Hb_002900_100--Hb_006907_050 Hb_002675_090--Hb_066514_010 Hb_145317_010 Hb_145317_010 Hb_002675_090--Hb_145317_010 Hb_000069_620 Hb_000069_620 Hb_002675_090--Hb_000069_620 Hb_002675_090--Hb_008119_030 Hb_000637_020 Hb_000637_020 Hb_002675_090--Hb_000637_020 Hb_164010_050 Hb_164010_050 Hb_003605_040--Hb_164010_050 Hb_003605_040--Hb_009222_070 Hb_003605_040--Hb_002498_240 Hb_003605_040--Hb_009808_010 Hb_000818_100 Hb_000818_100 Hb_003605_040--Hb_000818_100 Hb_005332_130 Hb_005332_130 Hb_000808_120--Hb_005332_130 Hb_002343_030 Hb_002343_030 Hb_000808_120--Hb_002343_030 Hb_004112_060 Hb_004112_060 Hb_000808_120--Hb_004112_060 Hb_053073_010 Hb_053073_010 Hb_000808_120--Hb_053073_010 Hb_013834_010 Hb_013834_010 Hb_000808_120--Hb_013834_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7536 63.6856 191.685 269.392 30.0274 78.469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8981 21.974 5.79179 18.2326 8.09039

CAGE analysis