Hb_000742_190

Information

Type -
Description -
Location Contig742: 174831-182415
Sequence    

Annotation

kegg
ID rcu:RCOM_1045330
description histidinol dehydrogenase, putative (EC:1.1.1.23)
nr
ID XP_012075594.1
description PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q5NAY4
description Histidinol dehydrogenase, chloroplastic OS=Oryza sativa subsp. japonica GN=HDH PE=2 SV=1
trembl
ID B9SBW3
description Histidinol dehydrogenase, chloroplastic OS=Ricinus communis GN=RCOM_1045330 PE=3 SV=1
Gene Ontology
ID GO:0009507
description histidinol chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_190 0.0 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_071781_010 0.1679417155 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
3 Hb_010488_040 0.1685730267 - - PREDICTED: phosphomannomutase [Populus euphratica]
4 Hb_008119_030 0.1699593848 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
5 Hb_003605_040 0.1769726304 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
6 Hb_002818_050 0.1821799978 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_002498_240 0.189387662 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
8 Hb_009808_010 0.1908705903 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
9 Hb_089140_120 0.192893688 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
10 Hb_002026_020 0.1976847696 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
11 Hb_031821_010 0.2009480242 - - ccd1, putative [Ricinus communis]
12 Hb_002250_050 0.202117896 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
13 Hb_010883_140 0.2043599288 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
14 Hb_119583_020 0.2046771091 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
15 Hb_001268_340 0.2057891369 - - Actin, putative [Ricinus communis]
16 Hb_080332_010 0.2068015238 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
17 Hb_001135_110 0.2088901801 - - -
18 Hb_001369_800 0.209783521 - - hypothetical protein B456_011G005000 [Gossypium raimondii]
19 Hb_164010_050 0.211016194 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
20 Hb_006829_070 0.2134177909 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_190 Hb_000742_190 Hb_071781_010 Hb_071781_010 Hb_000742_190--Hb_071781_010 Hb_010488_040 Hb_010488_040 Hb_000742_190--Hb_010488_040 Hb_008119_030 Hb_008119_030 Hb_000742_190--Hb_008119_030 Hb_003605_040 Hb_003605_040 Hb_000742_190--Hb_003605_040 Hb_002818_050 Hb_002818_050 Hb_000742_190--Hb_002818_050 Hb_002498_240 Hb_002498_240 Hb_000742_190--Hb_002498_240 Hb_071781_010--Hb_008119_030 Hb_002900_100 Hb_002900_100 Hb_071781_010--Hb_002900_100 Hb_002675_090 Hb_002675_090 Hb_071781_010--Hb_002675_090 Hb_071781_010--Hb_003605_040 Hb_000808_120 Hb_000808_120 Hb_071781_010--Hb_000808_120 Hb_001005_160 Hb_001005_160 Hb_010488_040--Hb_001005_160 Hb_000282_050 Hb_000282_050 Hb_010488_040--Hb_000282_050 Hb_000668_060 Hb_000668_060 Hb_010488_040--Hb_000668_060 Hb_004567_010 Hb_004567_010 Hb_010488_040--Hb_004567_010 Hb_004117_190 Hb_004117_190 Hb_010488_040--Hb_004117_190 Hb_008119_030--Hb_003605_040 Hb_009808_010 Hb_009808_010 Hb_008119_030--Hb_009808_010 Hb_002026_020 Hb_002026_020 Hb_008119_030--Hb_002026_020 Hb_009222_070 Hb_009222_070 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_164010_050 Hb_164010_050 Hb_003605_040--Hb_164010_050 Hb_003605_040--Hb_009222_070 Hb_003605_040--Hb_002498_240 Hb_003605_040--Hb_009808_010 Hb_000818_100 Hb_000818_100 Hb_003605_040--Hb_000818_100 Hb_010942_020 Hb_010942_020 Hb_002818_050--Hb_010942_020 Hb_002541_020 Hb_002541_020 Hb_002818_050--Hb_002541_020 Hb_084513_010 Hb_084513_010 Hb_002818_050--Hb_084513_010 Hb_001519_040 Hb_001519_040 Hb_002818_050--Hb_001519_040 Hb_002818_050--Hb_003605_040 Hb_001268_340 Hb_001268_340 Hb_002818_050--Hb_001268_340 Hb_005357_110 Hb_005357_110 Hb_002498_240--Hb_005357_110 Hb_001160_110 Hb_001160_110 Hb_002498_240--Hb_001160_110 Hb_004730_020 Hb_004730_020 Hb_002498_240--Hb_004730_020 Hb_074399_010 Hb_074399_010 Hb_002498_240--Hb_074399_010 Hb_001123_110 Hb_001123_110 Hb_002498_240--Hb_001123_110 Hb_003740_020 Hb_003740_020 Hb_002498_240--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.076269 0.0904983 0.224964 0.315033 0.025806 0.0913597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0606428 0.04771 0 0.0190373 0.0499587

CAGE analysis