Hb_002900_100

Information

Type -
Description -
Location Contig2900: 153592-154332
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20190g
description POPTRDRAFT_659588; hypothetical protein
nr
ID XP_012088132.1
description PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
swissprot
ID Q9M345
description L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1
trembl
ID A0A067LC92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01343 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30403: 153688-153956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_100 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
2 Hb_066514_010 0.097649959 - - hypothetical protein RCOM_0204720 [Ricinus communis]
3 Hb_002490_030 0.1231980743 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000816_190 0.1391510681 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002675_090 0.1394302942 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011918_010 0.1394476799 - - hypothetical protein glysoja_041948 [Glycine soja]
7 Hb_006907_050 0.1540541741 - - unnamed protein product [Coffea canephora]
8 Hb_007575_090 0.1577790724 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
9 Hb_002272_200 0.1653579042 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
10 Hb_001366_170 0.1709703137 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
11 Hb_053709_040 0.1717211168 - - putative actin-97 protein [Linum usitatissimum]
12 Hb_008185_020 0.1718853986 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
13 Hb_001474_040 0.175763607 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
14 Hb_184541_010 0.1760015027 - - PREDICTED: selT-like protein [Jatropha curcas]
15 Hb_007441_090 0.1781128805 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
16 Hb_071781_010 0.1788431581 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
17 Hb_008119_030 0.1801658326 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
18 Hb_001124_110 0.1802673013 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
19 Hb_004525_080 0.1815139035 - - Sugar transporter ERD6-like 6 [Morus notabilis]
20 Hb_186247_010 0.1849302234 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_002900_100 Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_002900_100--Hb_066514_010 Hb_002490_030 Hb_002490_030 Hb_002900_100--Hb_002490_030 Hb_000816_190 Hb_000816_190 Hb_002900_100--Hb_000816_190 Hb_002675_090 Hb_002675_090 Hb_002900_100--Hb_002675_090 Hb_011918_010 Hb_011918_010 Hb_002900_100--Hb_011918_010 Hb_006907_050 Hb_006907_050 Hb_002900_100--Hb_006907_050 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_000302_100 Hb_000302_100 Hb_066514_010--Hb_000302_100 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_000816_190--Hb_001366_170 Hb_000816_190--Hb_011918_010 Hb_002675_090--Hb_066514_010 Hb_145317_010 Hb_145317_010 Hb_002675_090--Hb_145317_010 Hb_000069_620 Hb_000069_620 Hb_002675_090--Hb_000069_620 Hb_002675_090--Hb_008119_030 Hb_000637_020 Hb_000637_020 Hb_002675_090--Hb_000637_020 Hb_007575_090 Hb_007575_090 Hb_011918_010--Hb_007575_090 Hb_184541_010 Hb_184541_010 Hb_011918_010--Hb_184541_010 Hb_004125_070 Hb_004125_070 Hb_011918_010--Hb_004125_070 Hb_011918_010--Hb_002490_030 Hb_006907_050--Hb_002490_030 Hb_006907_050--Hb_066514_010 Hb_006907_050--Hb_002272_200 Hb_074419_010 Hb_074419_010 Hb_006907_050--Hb_074419_010 Hb_001491_040 Hb_001491_040 Hb_006907_050--Hb_001491_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.723447 2.15425 4.69851 13.8405 1.55216 2.27218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.523647 0.470511 0.844763 1.67112 0.819736

CAGE analysis