Hb_006907_050

Information

Type -
Description -
Location Contig6907: 36383-37666
Sequence    

Annotation

kegg
ID fve:101308769
description protein TORNADO 2-like
nr
ID CDP13039.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9FIQ5
description Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1
trembl
ID A0A068UXQ1
description Coffea canephora DH200=94 genomic scaffold, scaffold_72 OS=Coffea canephora GN=GSCOC_T00037791001 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein tornado 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_050 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002900_100 0.1540541741 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
3 Hb_002490_030 0.1702127768 - - conserved hypothetical protein [Ricinus communis]
4 Hb_066514_010 0.1948033364 - - hypothetical protein RCOM_0204720 [Ricinus communis]
5 Hb_002272_200 0.1985861436 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
6 Hb_074419_010 0.2009187092 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
7 Hb_001491_040 0.2009381915 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_000816_190 0.2018367226 - - conserved hypothetical protein [Ricinus communis]
9 Hb_124951_020 0.2035339911 - - -
10 Hb_002749_040 0.2041112339 - - Ribosomal protein L6 family protein [Theobroma cacao]
11 Hb_002675_090 0.2053535802 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001882_150 0.2072302287 transcription factor TF Family: mTERF -
13 Hb_186247_010 0.2089514069 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
14 Hb_008026_010 0.2092556657 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Jatropha curcas]
15 Hb_030685_010 0.2146523968 - - -
16 Hb_000540_160 0.2161258162 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
17 Hb_004586_330 0.2168415584 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000032_430 0.2171523697 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007749_020 0.2176695322 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000320_030 0.2206093037 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_006907_050 Hb_006907_050 Hb_002900_100 Hb_002900_100 Hb_006907_050--Hb_002900_100 Hb_002490_030 Hb_002490_030 Hb_006907_050--Hb_002490_030 Hb_066514_010 Hb_066514_010 Hb_006907_050--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_006907_050--Hb_002272_200 Hb_074419_010 Hb_074419_010 Hb_006907_050--Hb_074419_010 Hb_001491_040 Hb_001491_040 Hb_006907_050--Hb_001491_040 Hb_002900_100--Hb_066514_010 Hb_002900_100--Hb_002490_030 Hb_000816_190 Hb_000816_190 Hb_002900_100--Hb_000816_190 Hb_002675_090 Hb_002675_090 Hb_002900_100--Hb_002675_090 Hb_011918_010 Hb_011918_010 Hb_002900_100--Hb_011918_010 Hb_002490_030--Hb_002272_200 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_002490_030--Hb_066514_010 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_000302_100 Hb_000302_100 Hb_066514_010--Hb_000302_100 Hb_002749_040 Hb_002749_040 Hb_002272_200--Hb_002749_040 Hb_007749_020 Hb_007749_020 Hb_002272_200--Hb_007749_020 Hb_000260_110 Hb_000260_110 Hb_002272_200--Hb_000260_110 Hb_002272_200--Hb_066514_010 Hb_002272_200--Hb_000302_100 Hb_001025_100 Hb_001025_100 Hb_074419_010--Hb_001025_100 Hb_006351_030 Hb_006351_030 Hb_074419_010--Hb_006351_030 Hb_030685_010 Hb_030685_010 Hb_074419_010--Hb_030685_010 Hb_008026_010 Hb_008026_010 Hb_074419_010--Hb_008026_010 Hb_000093_090 Hb_000093_090 Hb_074419_010--Hb_000093_090 Hb_001782_100 Hb_001782_100 Hb_074419_010--Hb_001782_100 Hb_003647_040 Hb_003647_040 Hb_001491_040--Hb_003647_040 Hb_002119_040 Hb_002119_040 Hb_001491_040--Hb_002119_040 Hb_002000_090 Hb_002000_090 Hb_001491_040--Hb_002000_090 Hb_005694_180 Hb_005694_180 Hb_001491_040--Hb_005694_180 Hb_002235_410 Hb_002235_410 Hb_001491_040--Hb_002235_410 Hb_004586_330 Hb_004586_330 Hb_001491_040--Hb_004586_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348485 0.775493 1.71959 4.54696 0.438831 0.338786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0433058 0.23804 0.750123 0.088153

CAGE analysis