Hb_008026_010

Information

Type -
Description -
Location Contig8026: 20791-22847
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14590g
description POPTRDRAFT_915608; Xyloglucan endotransglucosylase/hydrolase protein 9 precursor
nr
ID XP_012078987.1
description PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Jatropha curcas]
swissprot
ID Q8LDW9
description Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2
trembl
ID A0A067K7P7
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_13838 PE=3 SV=1
Gene Ontology
ID GO:0005618
description xyloglucan endotransglucosylase hydrolase protein 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58874: 20771-23065 , PASA_asmbl_58875: 20851-23035 , PASA_asmbl_58876: 21199-23004
cDNA
(Sanger)
(ID:Location)		 001_A14.ab1: 20771-22640 , 001_I12.ab1: 20771-22644 , 003_N10.ab1: 20771-22572 , 016_C06.ab1: 22566-23004 , 021_B11.ab1: 20771-22625 , 032_F06.ab1: 20771-22524 , 032_G13.ab1: 20771-22513 , 040_M06.ab1: 22534-23063 , 048_C06.ab1: 20771-22570

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008026_010 0.0 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Jatropha curcas]
2 Hb_074419_010 0.1521634158 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
3 Hb_005618_130 0.1747922198 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
4 Hb_030685_010 0.1749534145 - - -
5 Hb_005215_060 0.1911071409 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
6 Hb_000363_260 0.1919798563 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
7 Hb_002681_120 0.1935366887 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
8 Hb_000093_090 0.1972387962 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
9 Hb_003674_020 0.1977241032 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
10 Hb_000077_110 0.1997323129 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
11 Hb_000237_020 0.2029276104 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
12 Hb_000544_200 0.2057513006 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
13 Hb_000581_030 0.2090844846 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006907_050 0.2092556657 - - unnamed protein product [Coffea canephora]
15 Hb_003540_120 0.2096402448 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_001025_100 0.2109205167 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
17 Hb_000917_240 0.2114234115 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
18 Hb_020805_040 0.2125894856 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
19 Hb_003688_010 0.2150265895 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
20 Hb_186247_010 0.2163072291 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_008026_010 Hb_008026_010 Hb_074419_010 Hb_074419_010 Hb_008026_010--Hb_074419_010 Hb_005618_130 Hb_005618_130 Hb_008026_010--Hb_005618_130 Hb_030685_010 Hb_030685_010 Hb_008026_010--Hb_030685_010 Hb_005215_060 Hb_005215_060 Hb_008026_010--Hb_005215_060 Hb_000363_260 Hb_000363_260 Hb_008026_010--Hb_000363_260 Hb_002681_120 Hb_002681_120 Hb_008026_010--Hb_002681_120 Hb_001025_100 Hb_001025_100 Hb_074419_010--Hb_001025_100 Hb_006351_030 Hb_006351_030 Hb_074419_010--Hb_006351_030 Hb_074419_010--Hb_030685_010 Hb_000093_090 Hb_000093_090 Hb_074419_010--Hb_000093_090 Hb_001782_100 Hb_001782_100 Hb_074419_010--Hb_001782_100 Hb_003674_020 Hb_003674_020 Hb_005618_130--Hb_003674_020 Hb_003929_190 Hb_003929_190 Hb_005618_130--Hb_003929_190 Hb_005618_130--Hb_002681_120 Hb_002687_020 Hb_002687_020 Hb_005618_130--Hb_002687_020 Hb_001619_100 Hb_001619_100 Hb_005618_130--Hb_001619_100 Hb_003540_120 Hb_003540_120 Hb_030685_010--Hb_003540_120 Hb_030685_010--Hb_000093_090 Hb_003728_110 Hb_003728_110 Hb_030685_010--Hb_003728_110 Hb_001188_050 Hb_001188_050 Hb_030685_010--Hb_001188_050 Hb_003055_080 Hb_003055_080 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040 Hb_020805_040 Hb_020805_040 Hb_005215_060--Hb_020805_040 Hb_005215_060--Hb_000093_090 Hb_005215_060--Hb_002681_120 Hb_005215_060--Hb_003540_120 Hb_000077_110 Hb_000077_110 Hb_005215_060--Hb_000077_110 Hb_002774_120 Hb_002774_120 Hb_000363_260--Hb_002774_120 Hb_001119_070 Hb_001119_070 Hb_000363_260--Hb_001119_070 Hb_000363_260--Hb_002681_120 Hb_001450_040 Hb_001450_040 Hb_000363_260--Hb_001450_040 Hb_000363_260--Hb_003929_190 Hb_000077_100 Hb_000077_100 Hb_000363_260--Hb_000077_100 Hb_002681_120--Hb_003540_120 Hb_019654_060 Hb_019654_060 Hb_002681_120--Hb_019654_060 Hb_002681_120--Hb_001119_070 Hb_000581_030 Hb_000581_030 Hb_002681_120--Hb_000581_030 Hb_002681_120--Hb_003929_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2598 3.96166 56.4997 100.729 11.4413 9.08033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66196 0.554542 0.291727 29.2581 7.61979

CAGE analysis