Hb_000077_110

Information

Type -
Description -
Location Contig77: 83818-84750
Sequence    

Annotation

kegg
ID rcu:RCOM_1174260
description hypothetical protein
nr
ID XP_012088281.1
description PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25783 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_110 0.0 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
2 Hb_000483_080 0.1057376142 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
3 Hb_000307_220 0.1063632235 - - oxidoreductase family protein [Populus trichocarpa]
4 Hb_000566_130 0.1087499017 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
5 Hb_093458_020 0.1167974754 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
6 Hb_004920_050 0.1168060644 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
7 Hb_002284_260 0.1170583156 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
8 Hb_004968_040 0.1218275983 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
9 Hb_004007_130 0.132497587 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
10 Hb_000960_090 0.1412457422 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001123_310 0.1417437599 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
12 Hb_006970_130 0.1433801381 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
13 Hb_003540_120 0.1441178847 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_002871_130 0.144913363 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
15 Hb_004586_040 0.145069036 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
16 Hb_000237_020 0.1475201538 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
17 Hb_002965_160 0.1479942548 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
18 Hb_001188_050 0.1528390047 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000120_300 0.155878851 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
20 Hb_005271_140 0.1566275334 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]

Gene co-expression network

sample Hb_000077_110 Hb_000077_110 Hb_000483_080 Hb_000483_080 Hb_000077_110--Hb_000483_080 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000566_130 Hb_000566_130 Hb_000077_110--Hb_000566_130 Hb_093458_020 Hb_093458_020 Hb_000077_110--Hb_093458_020 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050 Hb_002284_260 Hb_002284_260 Hb_000077_110--Hb_002284_260 Hb_001123_310 Hb_001123_310 Hb_000483_080--Hb_001123_310 Hb_000120_300 Hb_000120_300 Hb_000483_080--Hb_000120_300 Hb_004531_080 Hb_004531_080 Hb_000483_080--Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_000483_080--Hb_002871_130 Hb_000483_080--Hb_002284_260 Hb_000237_020 Hb_000237_020 Hb_000307_220--Hb_000237_020 Hb_000307_220--Hb_000566_130 Hb_172706_020 Hb_172706_020 Hb_000307_220--Hb_172706_020 Hb_000581_030 Hb_000581_030 Hb_000307_220--Hb_000581_030 Hb_002518_090 Hb_002518_090 Hb_000307_220--Hb_002518_090 Hb_000566_130--Hb_093458_020 Hb_000566_130--Hb_004920_050 Hb_000960_090 Hb_000960_090 Hb_000566_130--Hb_000960_090 Hb_000566_130--Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_093458_020--Hb_002871_130 Hb_000003_060 Hb_000003_060 Hb_093458_020--Hb_000003_060 Hb_004968_040 Hb_004968_040 Hb_093458_020--Hb_004968_040 Hb_000181_270 Hb_000181_270 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000890_020 Hb_000890_020 Hb_004920_050--Hb_000890_020 Hb_002518_200 Hb_002518_200 Hb_004920_050--Hb_002518_200 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002284_260--Hb_002871_130 Hb_003360_010 Hb_003360_010 Hb_002284_260--Hb_003360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15061 4.47387 42.1168 33.6922 3.10027 3.68619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28825 1.70214 1.0618 14.2206 6.97519

CAGE analysis