Hb_011485_030

Information

Type -
Description -
Location Contig11485: 20336-26866
Sequence    

Annotation

kegg
ID rcu:RCOM_0212920
description hypothetical protein
nr
ID XP_012089463.1
description PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LED3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24035 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04473: 20361-26796 , PASA_asmbl_04477: 24297-24437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011485_030 0.0 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
2 Hb_000181_270 0.0782045978 - - ATP binding protein, putative [Ricinus communis]
3 Hb_004920_050 0.1125300397 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
4 Hb_000288_090 0.1424074214 - - unnamed protein product [Vitis vinifera]
5 Hb_005901_030 0.1612425007 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
6 Hb_000566_130 0.161927319 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
7 Hb_002518_200 0.1656245056 - - Proliferating cell nuclear antigen [Theobroma cacao]
8 Hb_007123_080 0.1668816521 - - big map kinase/bmk, putative [Ricinus communis]
9 Hb_002325_030 0.1669675211 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
10 Hb_002540_070 0.1700089085 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
11 Hb_000890_020 0.1703666569 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_093458_020 0.1733734279 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
13 Hb_001476_130 0.17343342 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
14 Hb_000692_210 0.1759323046 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
15 Hb_000529_040 0.1810858909 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
16 Hb_000077_110 0.18112208 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
17 Hb_000088_240 0.1835181436 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_002871_130 0.1836008336 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
19 Hb_000260_610 0.1879923659 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
20 Hb_002400_050 0.1893408633 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011485_030 Hb_011485_030 Hb_000181_270 Hb_000181_270 Hb_011485_030--Hb_000181_270 Hb_004920_050 Hb_004920_050 Hb_011485_030--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_011485_030--Hb_000288_090 Hb_005901_030 Hb_005901_030 Hb_011485_030--Hb_005901_030 Hb_000566_130 Hb_000566_130 Hb_011485_030--Hb_000566_130 Hb_002518_200 Hb_002518_200 Hb_011485_030--Hb_002518_200 Hb_000181_270--Hb_004920_050 Hb_000181_270--Hb_000288_090 Hb_000181_270--Hb_002518_200 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040 Hb_000890_020 Hb_000890_020 Hb_000181_270--Hb_000890_020 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_004920_050--Hb_000890_020 Hb_004920_050--Hb_002518_200 Hb_004920_050--Hb_000566_130 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_006970_130 Hb_006970_130 Hb_000288_090--Hb_006970_130 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_000260_650 Hb_000260_650 Hb_000288_090--Hb_000260_650 Hb_000288_090--Hb_004920_050 Hb_004957_020 Hb_004957_020 Hb_005901_030--Hb_004957_020 Hb_004155_020 Hb_004155_020 Hb_005901_030--Hb_004155_020 Hb_005901_030--Hb_000260_650 Hb_000211_100 Hb_000211_100 Hb_005901_030--Hb_000211_100 Hb_021495_010 Hb_021495_010 Hb_005901_030--Hb_021495_010 Hb_000640_050 Hb_000640_050 Hb_005901_030--Hb_000640_050 Hb_093458_020 Hb_093458_020 Hb_000566_130--Hb_093458_020 Hb_000566_130--Hb_000077_110 Hb_000307_220 Hb_000307_220 Hb_000566_130--Hb_000307_220 Hb_000960_090 Hb_000960_090 Hb_000566_130--Hb_000960_090 Hb_002284_260 Hb_002284_260 Hb_000566_130--Hb_002284_260 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1515 16.4867 94.048 33.4084 7.3822 5.37463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71267 2.57428 2.05483 37.1498 7.40399

CAGE analysis