Hb_021495_010

Information

Type -
Description -
Location Contig21495: 8278-9408
Sequence    

Annotation

kegg
ID rcu:RCOM_1378220
description hypothetical protein
nr
ID XP_002515665.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RPJ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1378220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22162: 8082-13012 , PASA_asmbl_22163: 8169-8746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021495_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000640_050 0.1140942403 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
3 Hb_005901_030 0.1412135042 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
4 Hb_001195_640 0.1499041807 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
5 Hb_010812_070 0.1510548377 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
6 Hb_000211_100 0.1586734871 - - PREDICTED: biotin synthase [Jatropha curcas]
7 Hb_003050_260 0.1602315059 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
8 Hb_000684_120 0.1616781027 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
9 Hb_000959_190 0.162430802 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
10 Hb_010998_050 0.1659939003 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
11 Hb_000563_440 0.1691954867 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
12 Hb_005271_140 0.1726610888 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
13 Hb_004155_020 0.1728289694 transcription factor TF Family: MYB myb, putative [Ricinus communis]
14 Hb_005144_210 0.1786435894 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000369_010 0.1787039371 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001232_090 0.1789181074 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
17 Hb_000345_410 0.180568848 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
18 Hb_002837_050 0.1812658999 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
19 Hb_011386_050 0.184473744 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
20 Hb_004957_020 0.1851658615 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021495_010 Hb_021495_010 Hb_000640_050 Hb_000640_050 Hb_021495_010--Hb_000640_050 Hb_005901_030 Hb_005901_030 Hb_021495_010--Hb_005901_030 Hb_001195_640 Hb_001195_640 Hb_021495_010--Hb_001195_640 Hb_010812_070 Hb_010812_070 Hb_021495_010--Hb_010812_070 Hb_000211_100 Hb_000211_100 Hb_021495_010--Hb_000211_100 Hb_003050_260 Hb_003050_260 Hb_021495_010--Hb_003050_260 Hb_000959_190 Hb_000959_190 Hb_000640_050--Hb_000959_190 Hb_010998_050 Hb_010998_050 Hb_000640_050--Hb_010998_050 Hb_004957_020 Hb_004957_020 Hb_000640_050--Hb_004957_020 Hb_000640_050--Hb_005901_030 Hb_003874_010 Hb_003874_010 Hb_000640_050--Hb_003874_010 Hb_005901_030--Hb_004957_020 Hb_004155_020 Hb_004155_020 Hb_005901_030--Hb_004155_020 Hb_000260_650 Hb_000260_650 Hb_005901_030--Hb_000260_650 Hb_005901_030--Hb_000211_100 Hb_160256_010 Hb_160256_010 Hb_001195_640--Hb_160256_010 Hb_001268_340 Hb_001268_340 Hb_001195_640--Hb_001268_340 Hb_001053_190 Hb_001053_190 Hb_001195_640--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_001195_640--Hb_010812_070 Hb_010812_070--Hb_003050_260 Hb_003001_090 Hb_003001_090 Hb_010812_070--Hb_003001_090 Hb_000987_040 Hb_000987_040 Hb_010812_070--Hb_000987_040 Hb_000331_140 Hb_000331_140 Hb_010812_070--Hb_000331_140 Hb_000369_010 Hb_000369_010 Hb_010812_070--Hb_000369_010 Hb_011386_050 Hb_011386_050 Hb_000211_100--Hb_011386_050 Hb_005784_070 Hb_005784_070 Hb_000211_100--Hb_005784_070 Hb_010080_010 Hb_010080_010 Hb_000211_100--Hb_010080_010 Hb_000098_150 Hb_000098_150 Hb_000211_100--Hb_000098_150 Hb_000211_100--Hb_004957_020 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_005144_210 Hb_005144_210 Hb_003050_260--Hb_005144_210 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15377 0.517426 5.20455 2.0566 1.06499 0.193635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.810946 0.695548 0.208363 1.12885 0.577741

CAGE analysis