Hb_010998_050

Information

Type -
Description -
Location Contig10998: 79939-83397
Sequence    

Annotation

kegg
ID rcu:RCOM_0915900
description Osmotic avoidance abnormal protein, putative
nr
ID XP_012074933.1
description PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
swissprot
ID Q6P3R1
description Kinesin-like protein KIF22 OS=Xenopus tropicalis GN=kif22 PE=2 SV=1
trembl
ID A0A067KHM4
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_09070 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kif22 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02945: 79849-80165 , PASA_asmbl_02946: 80323-80956 , PASA_asmbl_02947: 81196-83640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010998_050 0.0 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
2 Hb_036790_030 0.123479694 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
3 Hb_000345_410 0.1256828049 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
4 Hb_002007_280 0.127824732 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
5 Hb_000349_230 0.1293251028 - - PREDICTED: protein TPX2 [Jatropha curcas]
6 Hb_000345_130 0.1306046896 - - unnamed protein product [Coffea canephora]
7 Hb_005162_130 0.1377502008 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
8 Hb_000640_050 0.1377983707 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
9 Hb_030627_070 0.147235063 - - histone H4 [Zea mays]
10 Hb_003399_100 0.1514734672 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
11 Hb_001507_080 0.1519401658 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
12 Hb_002307_020 0.1562497093 - - PREDICTED: histone H1-like [Jatropha curcas]
13 Hb_004221_030 0.1607273084 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
14 Hb_005901_030 0.1629485361 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
15 Hb_114310_120 0.1634724046 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
16 Hb_021495_010 0.1659939003 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000563_440 0.1686255696 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
18 Hb_000684_120 0.1693950397 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
19 Hb_005725_150 0.1712071736 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
20 Hb_029510_130 0.1717465502 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_010998_050 Hb_010998_050 Hb_036790_030 Hb_036790_030 Hb_010998_050--Hb_036790_030 Hb_000345_410 Hb_000345_410 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_000349_230 Hb_000349_230 Hb_010998_050--Hb_000349_230 Hb_000345_130 Hb_000345_130 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130 Hb_036790_030--Hb_000345_130 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_000739_270 Hb_000739_270 Hb_036790_030--Hb_000739_270 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_036790_030--Hb_000349_230 Hb_000345_410--Hb_002007_280 Hb_000345_410--Hb_005162_130 Hb_008406_100 Hb_008406_100 Hb_000345_410--Hb_008406_100 Hb_000321_080 Hb_000321_080 Hb_000345_410--Hb_000321_080 Hb_000345_410--Hb_000345_130 Hb_002007_280--Hb_005162_130 Hb_002007_280--Hb_000345_130 Hb_002007_280--Hb_008406_100 Hb_002007_280--Hb_000349_230 Hb_029510_130 Hb_029510_130 Hb_002007_280--Hb_029510_130 Hb_000349_230--Hb_000345_130 Hb_000349_230--Hb_005162_130 Hb_000349_230--Hb_000345_410 Hb_000349_230--Hb_029510_130 Hb_000345_130--Hb_005162_130 Hb_005162_130--Hb_008406_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82272 0.799425 17.8865 6.1146 1.97619 1.22232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.37627 2.42173 1.62072 1.3248 0.940737

CAGE analysis