Hb_029510_130

Information

Type -
Description -
Location Contig29510: 70812-78416
Sequence    

Annotation

kegg
ID rcu:RCOM_1493480
description AMP dependent CoA ligase, putative (EC:6.2.1.26)
nr
ID XP_012073388.1
description PREDICTED: malonate--CoA ligase [Jatropha curcas]
swissprot
ID Q8H151
description Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1
trembl
ID A0A067KMD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06313 PE=4 SV=1
Gene Ontology
ID GO:0003824
description malonate-- ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30879: 71020-78484 , PASA_asmbl_30880: 71020-73565 , PASA_asmbl_30881: 71020-78484 , PASA_asmbl_30882: 77507-77736 , PASA_asmbl_30883: 72820-72950
cDNA
(Sanger)
(ID:Location)		 039_H05.ab1: 71119-72669 , 041_H10.ab1: 71119-72333 , 047_K17.ab1: 78388-78484

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_130 0.0 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
2 Hb_038044_010 0.0898380153 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
3 Hb_001501_070 0.1082703386 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
4 Hb_001478_020 0.1123833496 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
5 Hb_010180_030 0.1220630638 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
6 Hb_002007_280 0.1265194045 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
7 Hb_024973_020 0.1310674095 - - Protein regulator of cytokinesis, putative [Ricinus communis]
8 Hb_001780_080 0.1453898428 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
9 Hb_002078_120 0.1486414006 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
10 Hb_000349_230 0.1488177594 - - PREDICTED: protein TPX2 [Jatropha curcas]
11 Hb_005504_040 0.148830114 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008406_100 0.1490878687 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
13 Hb_000347_140 0.1520849177 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_005162_130 0.1529267461 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
15 Hb_000345_410 0.153415837 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
16 Hb_003784_040 0.1547517493 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
17 Hb_004155_020 0.1565644449 transcription factor TF Family: MYB myb, putative [Ricinus communis]
18 Hb_001890_020 0.1600267694 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
19 Hb_005725_150 0.1602494765 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
20 Hb_002942_120 0.1609812445 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]

Gene co-expression network

sample Hb_029510_130 Hb_029510_130 Hb_038044_010 Hb_038044_010 Hb_029510_130--Hb_038044_010 Hb_001501_070 Hb_001501_070 Hb_029510_130--Hb_001501_070 Hb_001478_020 Hb_001478_020 Hb_029510_130--Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_029510_130--Hb_010180_030 Hb_002007_280 Hb_002007_280 Hb_029510_130--Hb_002007_280 Hb_024973_020 Hb_024973_020 Hb_029510_130--Hb_024973_020 Hb_038044_010--Hb_001501_070 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_038044_010--Hb_024973_020 Hb_038044_010--Hb_001478_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_001501_070--Hb_001478_020 Hb_001501_070--Hb_010180_030 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_001501_070--Hb_024973_020 Hb_001478_020--Hb_010180_030 Hb_001780_080 Hb_001780_080 Hb_001478_020--Hb_001780_080 Hb_003784_040 Hb_003784_040 Hb_001478_020--Hb_003784_040 Hb_010180_030--Hb_003784_040 Hb_010180_030--Hb_001780_080 Hb_005725_150 Hb_005725_150 Hb_010180_030--Hb_005725_150 Hb_005504_040 Hb_005504_040 Hb_010180_030--Hb_005504_040 Hb_000345_410 Hb_000345_410 Hb_002007_280--Hb_000345_410 Hb_005162_130 Hb_005162_130 Hb_002007_280--Hb_005162_130 Hb_000345_130 Hb_000345_130 Hb_002007_280--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_002007_280--Hb_008406_100 Hb_000349_230 Hb_000349_230 Hb_002007_280--Hb_000349_230 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_024973_020--Hb_008406_100 Hb_001761_010 Hb_001761_010 Hb_024973_020--Hb_001761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6093 6.00798 148.884 36.0205 6.66925 5.86897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.61028 10.5878 12.4588 15.5172 18.181

CAGE analysis