Hb_005504_040

Information

Type -
Description -
Location Contig5504: 35500-39275
Sequence    

Annotation

kegg
ID rcu:RCOM_0174720
description hypothetical protein
nr
ID XP_002527487.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48249: 35227-36690 , PASA_asmbl_48251: 37498-37814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005504_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003784_040 0.0687471852 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
3 Hb_000139_280 0.1050982616 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
4 Hb_010180_030 0.1136791619 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
5 Hb_001780_080 0.1335093793 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
6 Hb_006275_060 0.1356546481 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_005725_150 0.1367630467 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
8 Hb_001478_020 0.1389463935 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
9 Hb_002307_020 0.1424575217 - - PREDICTED: histone H1-like [Jatropha curcas]
10 Hb_001501_070 0.1427169754 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
11 Hb_000260_040 0.1427889408 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
12 Hb_002007_040 0.1442263557 - - unnamed protein product [Coffea canephora]
13 Hb_000155_150 0.1448078048 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_000051_080 0.1484474424 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
15 Hb_029510_130 0.148830114 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
16 Hb_038044_010 0.155911782 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
17 Hb_000190_220 0.1568291036 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
18 Hb_002078_120 0.162712479 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
19 Hb_000500_340 0.1638012797 - - PREDICTED: exonuclease 1 [Jatropha curcas]
20 Hb_004650_030 0.1662979554 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005504_040 Hb_005504_040 Hb_003784_040 Hb_003784_040 Hb_005504_040--Hb_003784_040 Hb_000139_280 Hb_000139_280 Hb_005504_040--Hb_000139_280 Hb_010180_030 Hb_010180_030 Hb_005504_040--Hb_010180_030 Hb_001780_080 Hb_001780_080 Hb_005504_040--Hb_001780_080 Hb_006275_060 Hb_006275_060 Hb_005504_040--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_005504_040--Hb_005725_150 Hb_003784_040--Hb_010180_030 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_005725_150 Hb_001478_020 Hb_001478_020 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_000190_220 Hb_000190_220 Hb_000139_280--Hb_000190_220 Hb_000139_280--Hb_001780_080 Hb_000260_040 Hb_000260_040 Hb_000139_280--Hb_000260_040 Hb_000139_280--Hb_006275_060 Hb_010180_030--Hb_001478_020 Hb_001501_070 Hb_001501_070 Hb_010180_030--Hb_001501_070 Hb_010180_030--Hb_001780_080 Hb_010180_030--Hb_005725_150 Hb_001780_080--Hb_001478_020 Hb_001780_080--Hb_001501_070 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210 Hb_002307_020 Hb_002307_020 Hb_006275_060--Hb_002307_020 Hb_000155_150 Hb_000155_150 Hb_006275_060--Hb_000155_150 Hb_002045_190 Hb_002045_190 Hb_006275_060--Hb_002045_190 Hb_006275_060--Hb_003784_040 Hb_003399_100 Hb_003399_100 Hb_006275_060--Hb_003399_100 Hb_006275_060--Hb_005725_150 Hb_000051_080 Hb_000051_080 Hb_005725_150--Hb_000051_080 Hb_005725_150--Hb_001478_020 Hb_002007_040 Hb_002007_040 Hb_005725_150--Hb_002007_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0901837 0.111707 5.72199 2.51113 0.163529 0.171248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.698846 0.45368 0.498069 0.616858 0.730738

CAGE analysis