Hb_006275_060

Information

Type -
Description -
Location Contig6275: 80111-80521
Sequence    

Annotation

kegg
ID atr:s00030p00044250
description AMTR_s00030p00044250; hypothetical protein
nr
ID XP_006301260.1
description hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID B8B1H8
description Histone H3 OS=Oryza sativa subsp. indica GN=OsI_21765 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51734: 80014-80882
cDNA
(Sanger)
(ID:Location)		 016_G11.ab1: 80027-80694 , 019_J15.ab1: 80027-80689 , 037_I14.ab1: 80014-80498 , 050_K18.ab1: 80014-80685

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006275_060 0.0 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
2 Hb_002307_020 0.1010330547 - - PREDICTED: histone H1-like [Jatropha curcas]
3 Hb_000155_150 0.1190852289 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
4 Hb_002045_190 0.1209985517 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
5 Hb_003784_040 0.1232657796 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
6 Hb_003399_100 0.1279807209 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
7 Hb_005725_150 0.1344138216 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
8 Hb_005504_040 0.1356546481 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000139_280 0.1370272637 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
10 Hb_030627_070 0.1387858809 - - histone H4 [Zea mays]
11 Hb_000051_080 0.1394303572 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
12 Hb_002007_040 0.1435334029 - - unnamed protein product [Coffea canephora]
13 Hb_001780_080 0.1552609288 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
14 Hb_000684_120 0.1584756216 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
15 Hb_000260_040 0.1648579587 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
16 Hb_004116_120 0.167055283 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
17 Hb_006970_140 0.1700052926 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
18 Hb_033594_040 0.1741745981 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
19 Hb_010180_030 0.1812787312 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
20 Hb_010998_050 0.1822939696 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006275_060 Hb_006275_060 Hb_002307_020 Hb_002307_020 Hb_006275_060--Hb_002307_020 Hb_000155_150 Hb_000155_150 Hb_006275_060--Hb_000155_150 Hb_002045_190 Hb_002045_190 Hb_006275_060--Hb_002045_190 Hb_003784_040 Hb_003784_040 Hb_006275_060--Hb_003784_040 Hb_003399_100 Hb_003399_100 Hb_006275_060--Hb_003399_100 Hb_005725_150 Hb_005725_150 Hb_006275_060--Hb_005725_150 Hb_002007_040 Hb_002007_040 Hb_002307_020--Hb_002007_040 Hb_000051_080 Hb_000051_080 Hb_002307_020--Hb_000051_080 Hb_002307_020--Hb_003784_040 Hb_002307_020--Hb_000155_150 Hb_001780_080 Hb_001780_080 Hb_002307_020--Hb_001780_080 Hb_005504_040 Hb_005504_040 Hb_000155_150--Hb_005504_040 Hb_000155_150--Hb_003784_040 Hb_000172_090 Hb_000172_090 Hb_000155_150--Hb_000172_090 Hb_000155_150--Hb_001780_080 Hb_002045_190--Hb_003399_100 Hb_004116_120 Hb_004116_120 Hb_002045_190--Hb_004116_120 Hb_030627_070 Hb_030627_070 Hb_002045_190--Hb_030627_070 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_033594_040 Hb_033594_040 Hb_002045_190--Hb_033594_040 Hb_003784_040--Hb_005504_040 Hb_010180_030 Hb_010180_030 Hb_003784_040--Hb_010180_030 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_005725_150 Hb_001478_020 Hb_001478_020 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_003399_100--Hb_030627_070 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_089889_010 Hb_089889_010 Hb_003399_100--Hb_089889_010 Hb_005725_150--Hb_000051_080 Hb_005725_150--Hb_010180_030 Hb_005725_150--Hb_001478_020 Hb_005725_150--Hb_002007_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8383 11.2559 429.734 168.371 6.48057 9.29689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.4949 87.5611 42.2219 56.7878 29.5271

CAGE analysis