Hb_000051_080

Information

Type -
Description -
Location Contig51: 123940-133693
Sequence    

Annotation

kegg
ID cam:101493801
description putative DNA (cytosine-5)-methyltransferase CMT1-like
nr
ID XP_012093320.1
description PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
swissprot
ID Q94F88
description DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana GN=CMT3 PE=1 SV=2
trembl
ID A0A067L7A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19193 PE=3 SV=1
Gene Ontology
ID GO:0005634
description chromomethylase isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46255: 123850-137430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_080 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
2 Hb_005725_150 0.0884119591 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
3 Hb_003784_040 0.1128207349 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
4 Hb_002007_040 0.1128328385 - - unnamed protein product [Coffea canephora]
5 Hb_002307_020 0.1308192674 - - PREDICTED: histone H1-like [Jatropha curcas]
6 Hb_006275_060 0.1394303572 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_010180_030 0.1411791378 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
8 Hb_001478_020 0.1446176724 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
9 Hb_005504_040 0.1484474424 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000139_280 0.1716285152 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
11 Hb_002007_280 0.1726007032 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
12 Hb_001780_080 0.1740251097 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
13 Hb_000155_150 0.18690337 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_003399_100 0.1880774655 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
15 Hb_001501_070 0.1882950279 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
16 Hb_001890_020 0.1919348026 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
17 Hb_033594_040 0.1919695157 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
18 Hb_011360_130 0.1924391253 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000365_210 0.1963821605 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
20 Hb_005946_020 0.1977413151 - - Pleiotropic drug resistance protein 4 [Triticum urartu]

Gene co-expression network

sample Hb_000051_080 Hb_000051_080 Hb_005725_150 Hb_005725_150 Hb_000051_080--Hb_005725_150 Hb_003784_040 Hb_003784_040 Hb_000051_080--Hb_003784_040 Hb_002007_040 Hb_002007_040 Hb_000051_080--Hb_002007_040 Hb_002307_020 Hb_002307_020 Hb_000051_080--Hb_002307_020 Hb_006275_060 Hb_006275_060 Hb_000051_080--Hb_006275_060 Hb_010180_030 Hb_010180_030 Hb_000051_080--Hb_010180_030 Hb_005725_150--Hb_003784_040 Hb_005725_150--Hb_010180_030 Hb_001478_020 Hb_001478_020 Hb_005725_150--Hb_001478_020 Hb_005725_150--Hb_002007_040 Hb_005725_150--Hb_006275_060 Hb_005504_040 Hb_005504_040 Hb_003784_040--Hb_005504_040 Hb_003784_040--Hb_010180_030 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_001478_020 Hb_001780_080 Hb_001780_080 Hb_003784_040--Hb_001780_080 Hb_002007_040--Hb_002307_020 Hb_002007_040--Hb_001478_020 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_002007_040--Hb_003784_040 Hb_002307_020--Hb_006275_060 Hb_002307_020--Hb_003784_040 Hb_000155_150 Hb_000155_150 Hb_002307_020--Hb_000155_150 Hb_002307_020--Hb_001780_080 Hb_006275_060--Hb_000155_150 Hb_002045_190 Hb_002045_190 Hb_006275_060--Hb_002045_190 Hb_006275_060--Hb_003784_040 Hb_003399_100 Hb_003399_100 Hb_006275_060--Hb_003399_100 Hb_010180_030--Hb_001478_020 Hb_010180_030--Hb_001501_070 Hb_010180_030--Hb_001780_080 Hb_010180_030--Hb_005504_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65081 1.33338 51.9087 16.2543 0.55453 0.183882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.88157 3.2118 5.61914 3.6817 1.78298

CAGE analysis