Hb_030627_070

Information

Type -
Description -
Location Contig30627: 84059-84370
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_152862
description HFO1503; histone H4
nr
ID ACG30677.1
description histone H4 [Zea mays]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID Q5NSW2
description Histone H4 (Fragment) OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32378: 83935-84421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030627_070 0.0 - - histone H4 [Zea mays]
2 Hb_003399_100 0.1202315565 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
3 Hb_000684_120 0.1233938327 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
4 Hb_002045_190 0.1354872877 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
5 Hb_000005_110 0.1376691585 - - histone H2B1 [Hevea brasiliensis]
6 Hb_006275_060 0.1387858809 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_006445_020 0.1437156358 - - hypothetical protein L484_026741 [Morus notabilis]
8 Hb_010998_050 0.147235063 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
9 Hb_001252_240 0.1476416956 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
10 Hb_000563_440 0.1511567922 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
11 Hb_004116_100 0.1558841945 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
12 Hb_002205_140 0.1583640391 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
13 Hb_000905_120 0.1596948631 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
14 Hb_002307_020 0.1611469497 - - PREDICTED: histone H1-like [Jatropha curcas]
15 Hb_068194_010 0.1638508137 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
16 Hb_000740_040 0.1675793482 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
17 Hb_100790_010 0.168923939 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007741_130 0.1690598919 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
19 Hb_010080_010 0.171443097 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
20 Hb_001804_090 0.1747656588 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_030627_070 Hb_030627_070 Hb_003399_100 Hb_003399_100 Hb_030627_070--Hb_003399_100 Hb_000684_120 Hb_000684_120 Hb_030627_070--Hb_000684_120 Hb_002045_190 Hb_002045_190 Hb_030627_070--Hb_002045_190 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_006275_060 Hb_006275_060 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020 Hb_003399_100--Hb_002045_190 Hb_003399_100--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_089889_010 Hb_089889_010 Hb_003399_100--Hb_089889_010 Hb_000563_440 Hb_000563_440 Hb_000684_120--Hb_000563_440 Hb_005271_140 Hb_005271_140 Hb_000684_120--Hb_005271_140 Hb_001232_090 Hb_001232_090 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_004449_040 Hb_004449_040 Hb_000684_120--Hb_004449_040 Hb_002045_190--Hb_006275_060 Hb_004116_120 Hb_004116_120 Hb_002045_190--Hb_004116_120 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_033594_040 Hb_033594_040 Hb_002045_190--Hb_033594_040 Hb_000345_460 Hb_000345_460 Hb_000005_110--Hb_000345_460 Hb_000364_170 Hb_000364_170 Hb_000005_110--Hb_000364_170 Hb_000740_040 Hb_000740_040 Hb_000005_110--Hb_000740_040 Hb_188281_030 Hb_188281_030 Hb_000005_110--Hb_188281_030 Hb_001221_030 Hb_001221_030 Hb_000005_110--Hb_001221_030 Hb_002307_020 Hb_002307_020 Hb_006275_060--Hb_002307_020 Hb_000155_150 Hb_000155_150 Hb_006275_060--Hb_000155_150 Hb_003784_040 Hb_003784_040 Hb_006275_060--Hb_003784_040 Hb_006275_060--Hb_005725_150 Hb_068194_010 Hb_068194_010 Hb_006445_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_006445_020--Hb_027506_040 Hb_002205_140 Hb_002205_140 Hb_006445_020--Hb_002205_140 Hb_000676_020 Hb_000676_020 Hb_006445_020--Hb_000676_020 Hb_003602_060 Hb_003602_060 Hb_006445_020--Hb_003602_060 Hb_118282_010 Hb_118282_010 Hb_006445_020--Hb_118282_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.4884 32.9123 465.031 164.513 22.4537 34.8281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.836 116.854 76.4171 79.5916 51.9147

CAGE analysis