Hb_118282_010

Information

Type -
Description -
Location Contig118282: 6329-7219
Sequence    

Annotation

kegg
ID tcc:TCM_028908
description Oxidative stress 3, putative isoform 1
nr
ID XP_011000943.1
description PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061GC09
description Oxidative stress 3, putative isoform 1 OS=Theobroma cacao GN=TCM_028908 PE=4 SV=1
Gene Ontology
ID GO:0050896
description oxidative stress isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05460: 6329-7328
cDNA
(Sanger)
(ID:Location)		 039_L08.ab1: 6324-7309 , 040_K07.ab1: 6329-7314

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118282_010 0.0 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
2 Hb_000025_370 0.1103191396 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
3 Hb_011053_010 0.1340984698 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
4 Hb_000740_040 0.1357183484 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
5 Hb_006445_020 0.1407094725 - - hypothetical protein L484_026741 [Morus notabilis]
6 Hb_002909_020 0.1471386522 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
7 Hb_001073_080 0.1479129332 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
8 Hb_000390_090 0.1500724104 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
9 Hb_003077_150 0.1583067171 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
10 Hb_001804_090 0.1623859763 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
11 Hb_000905_120 0.16697478 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
12 Hb_002028_090 0.1686350971 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
13 Hb_005181_160 0.1697929106 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
14 Hb_006061_040 0.1707819825 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
15 Hb_100790_010 0.1720421804 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000923_060 0.172390098 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
17 Hb_005375_050 0.1742676137 - - inorganic pyrophosphatase, putative [Ricinus communis]
18 Hb_007741_130 0.1746874304 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
19 Hb_030627_070 0.1750676607 - - histone H4 [Zea mays]
20 Hb_015807_160 0.1754788914 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]

Gene co-expression network

sample Hb_118282_010 Hb_118282_010 Hb_000025_370 Hb_000025_370 Hb_118282_010--Hb_000025_370 Hb_011053_010 Hb_011053_010 Hb_118282_010--Hb_011053_010 Hb_000740_040 Hb_000740_040 Hb_118282_010--Hb_000740_040 Hb_006445_020 Hb_006445_020 Hb_118282_010--Hb_006445_020 Hb_002909_020 Hb_002909_020 Hb_118282_010--Hb_002909_020 Hb_001073_080 Hb_001073_080 Hb_118282_010--Hb_001073_080 Hb_002028_090 Hb_002028_090 Hb_000025_370--Hb_002028_090 Hb_002671_090 Hb_002671_090 Hb_000025_370--Hb_002671_090 Hb_000025_370--Hb_011053_010 Hb_005181_160 Hb_005181_160 Hb_000025_370--Hb_005181_160 Hb_004984_030 Hb_004984_030 Hb_000025_370--Hb_004984_030 Hb_000413_060 Hb_000413_060 Hb_011053_010--Hb_000413_060 Hb_000390_090 Hb_000390_090 Hb_011053_010--Hb_000390_090 Hb_006061_040 Hb_006061_040 Hb_011053_010--Hb_006061_040 Hb_000163_100 Hb_000163_100 Hb_011053_010--Hb_000163_100 Hb_002343_040 Hb_002343_040 Hb_011053_010--Hb_002343_040 Hb_146255_020 Hb_146255_020 Hb_011053_010--Hb_146255_020 Hb_000740_040--Hb_001073_080 Hb_001329_090 Hb_001329_090 Hb_000740_040--Hb_001329_090 Hb_000005_110 Hb_000005_110 Hb_000740_040--Hb_000005_110 Hb_000035_240 Hb_000035_240 Hb_000740_040--Hb_000035_240 Hb_003126_130 Hb_003126_130 Hb_000740_040--Hb_003126_130 Hb_068194_010 Hb_068194_010 Hb_006445_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_006445_020--Hb_027506_040 Hb_002205_140 Hb_002205_140 Hb_006445_020--Hb_002205_140 Hb_000676_020 Hb_000676_020 Hb_006445_020--Hb_000676_020 Hb_003602_060 Hb_003602_060 Hb_006445_020--Hb_003602_060 Hb_001863_130 Hb_001863_130 Hb_002909_020--Hb_001863_130 Hb_002909_020--Hb_003126_130 Hb_000832_190 Hb_000832_190 Hb_002909_020--Hb_000832_190 Hb_001377_450 Hb_001377_450 Hb_002909_020--Hb_001377_450 Hb_002909_020--Hb_004984_030 Hb_007741_130 Hb_007741_130 Hb_002909_020--Hb_007741_130 Hb_007894_050 Hb_007894_050 Hb_001073_080--Hb_007894_050 Hb_001073_080--Hb_000390_090 Hb_001301_340 Hb_001301_340 Hb_001073_080--Hb_001301_340 Hb_001073_080--Hb_001377_450 Hb_000160_180 Hb_000160_180 Hb_001073_080--Hb_000160_180 Hb_000429_040 Hb_000429_040 Hb_001073_080--Hb_000429_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1447 30.0971 154.745 45.4121 10.7012 16.6674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.2888 90.6607 42.1359 16.6277 33.592

CAGE analysis