Hb_089140_090

Information

Type -
Description -
Location Contig89140: 57294-60834
Sequence    

Annotation

kegg
ID bvg:104907637
description ankyrin repeat-containing protein At3g12360-like
nr
ID XP_010694915.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
swissprot
ID Q7Z6G8
description Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2
trembl
ID A0A068U3H6
description Coffea canephora DH200=94 genomic scaffold, scaffold_9 OS=Coffea canephora GN=GSCOC_T00041545001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61670: 53698-56639 , PASA_asmbl_61671: 53654-56639 , PASA_asmbl_61674: 57707-57870 , PASA_asmbl_61675: 57932-58106 , PASA_asmbl_61676: 58132-59003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_090 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
2 Hb_001114_170 0.1198407624 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033594_040 0.1424182051 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
4 Hb_002027_440 0.1427822302 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000563_440 0.143878288 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
6 Hb_015807_160 0.1449933571 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
7 Hb_002045_190 0.1479032694 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
8 Hb_006445_020 0.1566536219 - - hypothetical protein L484_026741 [Morus notabilis]
9 Hb_101146_010 0.1601134353 - - PREDICTED: peregrin-like [Jatropha curcas]
10 Hb_000282_050 0.161680038 - - calcineurin B, putative [Ricinus communis]
11 Hb_009486_210 0.1672000043 - - -
12 Hb_001767_060 0.1694214275 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_001155_050 0.1743960965 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
14 Hb_011242_050 0.1779481197 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
15 Hb_089140_110 0.1781748472 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_007113_080 0.1782520169 - - PREDICTED: uncharacterized protein LOC105639553 isoform X1 [Jatropha curcas]
17 Hb_013405_070 0.1790140693 - - ferric-chelate reductase, putative [Ricinus communis]
18 Hb_007044_090 0.1790613612 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
19 Hb_004449_040 0.1801393071 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
20 Hb_000800_020 0.1803890751 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_089140_090 Hb_089140_090 Hb_001114_170 Hb_001114_170 Hb_089140_090--Hb_001114_170 Hb_033594_040 Hb_033594_040 Hb_089140_090--Hb_033594_040 Hb_002027_440 Hb_002027_440 Hb_089140_090--Hb_002027_440 Hb_000563_440 Hb_000563_440 Hb_089140_090--Hb_000563_440 Hb_015807_160 Hb_015807_160 Hb_089140_090--Hb_015807_160 Hb_002045_190 Hb_002045_190 Hb_089140_090--Hb_002045_190 Hb_000757_130 Hb_000757_130 Hb_001114_170--Hb_000757_130 Hb_001114_170--Hb_015807_160 Hb_001114_170--Hb_002027_440 Hb_001863_070 Hb_001863_070 Hb_001114_170--Hb_001863_070 Hb_101146_010 Hb_101146_010 Hb_001114_170--Hb_101146_010 Hb_004046_060 Hb_004046_060 Hb_033594_040--Hb_004046_060 Hb_004116_120 Hb_004116_120 Hb_033594_040--Hb_004116_120 Hb_033594_040--Hb_002045_190 Hb_033594_040--Hb_000563_440 Hb_000139_280 Hb_000139_280 Hb_033594_040--Hb_000139_280 Hb_011242_050 Hb_011242_050 Hb_002027_440--Hb_011242_050 Hb_002027_440--Hb_001863_070 Hb_001329_070 Hb_001329_070 Hb_002027_440--Hb_001329_070 Hb_000345_460 Hb_000345_460 Hb_002027_440--Hb_000345_460 Hb_013405_070 Hb_013405_070 Hb_002027_440--Hb_013405_070 Hb_188281_030 Hb_188281_030 Hb_002027_440--Hb_188281_030 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_093458_010 Hb_093458_010 Hb_015807_160--Hb_093458_010 Hb_015807_160--Hb_001863_070 Hb_001767_060 Hb_001767_060 Hb_015807_160--Hb_001767_060 Hb_040819_010 Hb_040819_010 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_003399_100 Hb_003399_100 Hb_002045_190--Hb_003399_100 Hb_006275_060 Hb_006275_060 Hb_002045_190--Hb_006275_060 Hb_002045_190--Hb_004116_120 Hb_030627_070 Hb_030627_070 Hb_002045_190--Hb_030627_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.331963 0.731541 3.86816 2.03353 0.121401 0.1573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.487778 1.67651 0.38176 0.313776 0.850649

CAGE analysis