Hb_004046_060

Information

Type -
Description -
Location Contig4046: 91826-92599
Sequence    

Annotation

kegg
ID rcu:RCOM_1328320
description hypothetical protein
nr
ID XP_012070262.1
description PREDICTED: protein CDI [Jatropha curcas]
swissprot
ID Q9XIP8
description Protein CDI OS=Arabidopsis thaliana GN=CDI PE=2 SV=1
trembl
ID A0A067KTJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02571 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cdi

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40144: 91022-92876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004046_060 0.0 - - PREDICTED: protein CDI [Jatropha curcas]
2 Hb_033594_040 0.1390459199 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
3 Hb_001541_190 0.1552646088 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
4 Hb_002217_190 0.161612741 - - invertase [Hevea brasiliensis]
5 Hb_000175_300 0.1674452328 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
6 Hb_004679_040 0.1683909084 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
7 Hb_006289_020 0.171286096 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
8 Hb_000069_300 0.1717024364 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_000230_190 0.1750646673 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
10 Hb_031266_030 0.1751994766 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
11 Hb_001155_050 0.1770542167 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
12 Hb_004452_090 0.1779818685 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
13 Hb_000956_050 0.178372888 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
14 Hb_001198_080 0.1790061707 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
15 Hb_000190_220 0.1826360288 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
16 Hb_003599_060 0.1827922671 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000236_480 0.1868400494 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
18 Hb_000139_280 0.1883163899 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
19 Hb_001250_130 0.1886120847 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
20 Hb_005946_020 0.1893444058 - - Pleiotropic drug resistance protein 4 [Triticum urartu]

Gene co-expression network

sample Hb_004046_060 Hb_004046_060 Hb_033594_040 Hb_033594_040 Hb_004046_060--Hb_033594_040 Hb_001541_190 Hb_001541_190 Hb_004046_060--Hb_001541_190 Hb_002217_190 Hb_002217_190 Hb_004046_060--Hb_002217_190 Hb_000175_300 Hb_000175_300 Hb_004046_060--Hb_000175_300 Hb_004679_040 Hb_004679_040 Hb_004046_060--Hb_004679_040 Hb_006289_020 Hb_006289_020 Hb_004046_060--Hb_006289_020 Hb_004116_120 Hb_004116_120 Hb_033594_040--Hb_004116_120 Hb_089140_090 Hb_089140_090 Hb_033594_040--Hb_089140_090 Hb_002045_190 Hb_002045_190 Hb_033594_040--Hb_002045_190 Hb_000563_440 Hb_000563_440 Hb_033594_040--Hb_000563_440 Hb_000139_280 Hb_000139_280 Hb_033594_040--Hb_000139_280 Hb_000069_300 Hb_000069_300 Hb_001541_190--Hb_000069_300 Hb_001307_020 Hb_001307_020 Hb_001541_190--Hb_001307_020 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070 Hb_001519_060 Hb_001519_060 Hb_002217_190--Hb_001519_060 Hb_008173_060 Hb_008173_060 Hb_002217_190--Hb_008173_060 Hb_000818_120 Hb_000818_120 Hb_002217_190--Hb_000818_120 Hb_001627_010 Hb_001627_010 Hb_002217_190--Hb_001627_010 Hb_176472_020 Hb_176472_020 Hb_002217_190--Hb_176472_020 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080 Hb_000175_300--Hb_000069_300 Hb_000190_220 Hb_000190_220 Hb_000175_300--Hb_000190_220 Hb_000175_300--Hb_001307_020 Hb_001633_160 Hb_001633_160 Hb_000175_300--Hb_001633_160 Hb_000175_300--Hb_004679_040 Hb_091318_010 Hb_091318_010 Hb_004679_040--Hb_091318_010 Hb_001155_050 Hb_001155_050 Hb_004679_040--Hb_001155_050 Hb_054865_050 Hb_054865_050 Hb_004679_040--Hb_054865_050 Hb_000000_480 Hb_000000_480 Hb_004679_040--Hb_000000_480 Hb_000757_130 Hb_000757_130 Hb_004679_040--Hb_000757_130 Hb_002249_170 Hb_002249_170 Hb_004679_040--Hb_002249_170 Hb_002965_160 Hb_002965_160 Hb_006289_020--Hb_002965_160 Hb_003878_060 Hb_003878_060 Hb_006289_020--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_006289_020--Hb_000236_480 Hb_008725_070 Hb_008725_070 Hb_006289_020--Hb_008725_070 Hb_000960_090 Hb_000960_090 Hb_006289_020--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_006289_020--Hb_000288_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9537 29.3183 120.721 70.521 1.07294 1.77039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.70013 14.6397 14.5996 7.43816 14.644

CAGE analysis