Hb_001329_070

Information

Type -
Description -
Location Contig1329: 49106-53845
Sequence    

Annotation

kegg
ID rcu:RCOM_1345100
description Glycogen synthase kinase-3 beta, putative (EC:2.7.11.26)
nr
ID XP_002515218.1
description Glycogen synthase kinase-3 beta, putative [Ricinus communis]
swissprot
ID P43288
description Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=1 SV=3
trembl
ID B9RN79
description Glycogen synthase kinase-3 beta, putative OS=Ricinus communis GN=RCOM_1345100 PE=4 SV=1
Gene Ontology
ID GO:0004672
description shaggy-related protein kinase alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09384: 49076-53814 , PASA_asmbl_09385: 49148-53785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_070 0.0 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
2 Hb_000206_230 0.0922164219 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002016_140 0.1113830051 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
4 Hb_002027_440 0.1115241597 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011242_050 0.1197385487 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
6 Hb_013405_070 0.121354213 - - ferric-chelate reductase, putative [Ricinus communis]
7 Hb_003602_060 0.1282099164 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
8 Hb_001863_070 0.131078134 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
9 Hb_002007_320 0.1322846912 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
10 Hb_000310_120 0.1370769678 - - PREDICTED: probable transaldolase [Jatropha curcas]
11 Hb_000331_350 0.1382760047 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
12 Hb_000406_030 0.1382916115 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
13 Hb_001817_100 0.1385217163 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
14 Hb_004052_100 0.1400522067 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
15 Hb_002534_130 0.1408472975 - - membrane associated ring finger 1,8, putative [Ricinus communis]
16 Hb_010172_110 0.1475045964 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_188281_030 0.1513333952 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
18 Hb_006711_090 0.1514442562 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
19 Hb_003371_070 0.1528948511 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
20 Hb_000116_020 0.1542029543 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_070 Hb_001329_070 Hb_000206_230 Hb_000206_230 Hb_001329_070--Hb_000206_230 Hb_002016_140 Hb_002016_140 Hb_001329_070--Hb_002016_140 Hb_002027_440 Hb_002027_440 Hb_001329_070--Hb_002027_440 Hb_011242_050 Hb_011242_050 Hb_001329_070--Hb_011242_050 Hb_013405_070 Hb_013405_070 Hb_001329_070--Hb_013405_070 Hb_003602_060 Hb_003602_060 Hb_001329_070--Hb_003602_060 Hb_000206_230--Hb_002016_140 Hb_000206_230--Hb_011242_050 Hb_002007_320 Hb_002007_320 Hb_000206_230--Hb_002007_320 Hb_000310_120 Hb_000310_120 Hb_000206_230--Hb_000310_120 Hb_000206_230--Hb_013405_070 Hb_002391_320 Hb_002391_320 Hb_002016_140--Hb_002391_320 Hb_000589_170 Hb_000589_170 Hb_002016_140--Hb_000589_170 Hb_012851_020 Hb_012851_020 Hb_002016_140--Hb_012851_020 Hb_000753_110 Hb_000753_110 Hb_002016_140--Hb_000753_110 Hb_002027_440--Hb_011242_050 Hb_001863_070 Hb_001863_070 Hb_002027_440--Hb_001863_070 Hb_000345_460 Hb_000345_460 Hb_002027_440--Hb_000345_460 Hb_002027_440--Hb_013405_070 Hb_188281_030 Hb_188281_030 Hb_002027_440--Hb_188281_030 Hb_011242_050--Hb_001863_070 Hb_011242_050--Hb_188281_030 Hb_011242_050--Hb_000345_460 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_003602_060--Hb_001863_070 Hb_003602_060--Hb_002007_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.894608 3.84111 18.6596 15.0938 0.403006 0.987522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15565 8.18343 4.57763 8.0687 9.31624

CAGE analysis