Hb_000260_040

Information

Type -
Description -
Location Contig260: 32631-33435
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10990g
description POPTRDRAFT_762591; hypothetical protein
nr
ID XP_012091037.1
description PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00644 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26933: 32514-33084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_040 0.0 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
2 Hb_000139_280 0.1349767281 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
3 Hb_005504_040 0.1427889408 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004650_030 0.1431495678 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
5 Hb_001401_040 0.1479005768 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
6 Hb_003784_040 0.1526677229 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
7 Hb_000172_090 0.1551127066 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
8 Hb_001408_170 0.156302542 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
9 Hb_006275_060 0.1648579587 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_006570_040 0.1806825739 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
11 Hb_000500_340 0.1874837226 - - PREDICTED: exonuclease 1 [Jatropha curcas]
12 Hb_000155_150 0.1922591951 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
13 Hb_003055_090 0.1955730784 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
14 Hb_005725_150 0.1968331519 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
15 Hb_000190_220 0.1992527099 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
16 Hb_010180_030 0.2009171492 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
17 Hb_004531_080 0.2014161923 - - hypothetical protein RCOM_1491960 [Ricinus communis]
18 Hb_004052_100 0.2022773612 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
19 Hb_001268_160 0.2023744897 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
20 Hb_033594_040 0.2024996513 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_040 Hb_000260_040 Hb_000139_280 Hb_000139_280 Hb_000260_040--Hb_000139_280 Hb_005504_040 Hb_005504_040 Hb_000260_040--Hb_005504_040 Hb_004650_030 Hb_004650_030 Hb_000260_040--Hb_004650_030 Hb_001401_040 Hb_001401_040 Hb_000260_040--Hb_001401_040 Hb_003784_040 Hb_003784_040 Hb_000260_040--Hb_003784_040 Hb_000172_090 Hb_000172_090 Hb_000260_040--Hb_000172_090 Hb_000139_280--Hb_003784_040 Hb_000139_280--Hb_005504_040 Hb_000190_220 Hb_000190_220 Hb_000139_280--Hb_000190_220 Hb_001780_080 Hb_001780_080 Hb_000139_280--Hb_001780_080 Hb_006275_060 Hb_006275_060 Hb_000139_280--Hb_006275_060 Hb_005504_040--Hb_003784_040 Hb_010180_030 Hb_010180_030 Hb_005504_040--Hb_010180_030 Hb_005504_040--Hb_001780_080 Hb_005504_040--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_005504_040--Hb_005725_150 Hb_004650_030--Hb_001401_040 Hb_000108_240 Hb_000108_240 Hb_004650_030--Hb_000108_240 Hb_004531_080 Hb_004531_080 Hb_004650_030--Hb_004531_080 Hb_001377_530 Hb_001377_530 Hb_004650_030--Hb_001377_530 Hb_010172_110 Hb_010172_110 Hb_004650_030--Hb_010172_110 Hb_003055_090 Hb_003055_090 Hb_001401_040--Hb_003055_090 Hb_001408_170 Hb_001408_170 Hb_001401_040--Hb_001408_170 Hb_003408_010 Hb_003408_010 Hb_001401_040--Hb_003408_010 Hb_017439_010 Hb_017439_010 Hb_001401_040--Hb_017439_010 Hb_001268_160 Hb_001268_160 Hb_001401_040--Hb_001268_160 Hb_003784_040--Hb_010180_030 Hb_003784_040--Hb_005725_150 Hb_001478_020 Hb_001478_020 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_000500_340 Hb_000500_340 Hb_000172_090--Hb_000500_340 Hb_000172_090--Hb_000139_280 Hb_003228_050 Hb_003228_050 Hb_000172_090--Hb_003228_050 Hb_007632_210 Hb_007632_210 Hb_000172_090--Hb_007632_210 Hb_000155_150 Hb_000155_150 Hb_000172_090--Hb_000155_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164437 0.0767684 5.74156 3.58326 0.0413564 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.953031 0.973776 0.658724 0.643643 1.31261

CAGE analysis