Hb_002837_050

Information

Type -
Description -
Location Contig2837: 60589-61032
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00550g
description POPTRDRAFT_831745; hypothetical protein
nr
ID XP_002308752.1
description hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P7U2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s00550g PE=2 SV=1
Gene Ontology
ID GO:0005886
description maternal effect embryo arrest 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29690: 60576-61242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_050 0.0 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
2 Hb_001396_210 0.1402992673 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003050_260 0.1423886919 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
4 Hb_004117_190 0.1595735013 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
5 Hb_000684_120 0.1654744449 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
6 Hb_001195_640 0.1667392612 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
7 Hb_000950_070 0.1699104988 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
8 Hb_000215_090 0.1738950569 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
9 Hb_007477_030 0.1747212052 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
10 Hb_021495_010 0.1812658999 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001268_340 0.1827944094 - - Actin, putative [Ricinus communis]
12 Hb_114336_030 0.1843624575 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
13 Hb_010812_070 0.1849956342 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
14 Hb_000580_100 0.1870288706 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
15 Hb_002411_060 0.1880040339 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
16 Hb_001140_070 0.1901464096 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
17 Hb_039021_010 0.1908934749 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
18 Hb_002284_210 0.1909136888 - - PREDICTED: protein canopy-1 [Jatropha curcas]
19 Hb_001114_160 0.1931036275 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
20 Hb_000364_170 0.1933518642 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]

Gene co-expression network

sample Hb_002837_050 Hb_002837_050 Hb_001396_210 Hb_001396_210 Hb_002837_050--Hb_001396_210 Hb_003050_260 Hb_003050_260 Hb_002837_050--Hb_003050_260 Hb_004117_190 Hb_004117_190 Hb_002837_050--Hb_004117_190 Hb_000684_120 Hb_000684_120 Hb_002837_050--Hb_000684_120 Hb_001195_640 Hb_001195_640 Hb_002837_050--Hb_001195_640 Hb_000950_070 Hb_000950_070 Hb_002837_050--Hb_000950_070 Hb_012340_090 Hb_012340_090 Hb_001396_210--Hb_012340_090 Hb_001025_090 Hb_001025_090 Hb_001396_210--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_001396_210--Hb_003848_040 Hb_002092_120 Hb_002092_120 Hb_001396_210--Hb_002092_120 Hb_001105_170 Hb_001105_170 Hb_001396_210--Hb_001105_170 Hb_000270_470 Hb_000270_470 Hb_001396_210--Hb_000270_470 Hb_010812_070 Hb_010812_070 Hb_003050_260--Hb_010812_070 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_005144_210 Hb_005144_210 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040 Hb_000580_100 Hb_000580_100 Hb_004117_190--Hb_000580_100 Hb_007741_130 Hb_007741_130 Hb_004117_190--Hb_007741_130 Hb_005054_220 Hb_005054_220 Hb_004117_190--Hb_005054_220 Hb_101146_010 Hb_101146_010 Hb_004117_190--Hb_101146_010 Hb_003540_050 Hb_003540_050 Hb_004117_190--Hb_003540_050 Hb_004117_190--Hb_001268_340 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000563_440 Hb_000563_440 Hb_000684_120--Hb_000563_440 Hb_005271_140 Hb_005271_140 Hb_000684_120--Hb_005271_140 Hb_001232_090 Hb_001232_090 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_004449_040 Hb_004449_040 Hb_000684_120--Hb_004449_040 Hb_160256_010 Hb_160256_010 Hb_001195_640--Hb_160256_010 Hb_001195_640--Hb_001268_340 Hb_001053_190 Hb_001053_190 Hb_001195_640--Hb_001053_190 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_001195_640--Hb_010812_070 Hb_002471_250 Hb_002471_250 Hb_000950_070--Hb_002471_250 Hb_000950_070--Hb_001396_210 Hb_000215_090 Hb_000215_090 Hb_000950_070--Hb_000215_090 Hb_027792_010 Hb_027792_010 Hb_000950_070--Hb_027792_010 Hb_001517_050 Hb_001517_050 Hb_000950_070--Hb_001517_050 Hb_158144_010 Hb_158144_010 Hb_000950_070--Hb_158144_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.904 39.4456 420.426 277.868 64.4125 58.476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.988 189.657 8.51314 136.795 93.0232

CAGE analysis