Hb_010812_070

Information

Type -
Description -
Location Contig10812: 47150-50069
Sequence    

Annotation

kegg
ID rcu:RCOM_0690140
description Myosin heavy chain, embryonic smooth muscle isoform, putative
nr
ID XP_012091115.1
description PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
swissprot
ID Q84VY2
description Protein NETWORKED 4B OS=Arabidopsis thaliana GN=NET4B PE=2 SV=1
trembl
ID A0A067L7D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03765 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02498: 47041-50020 , PASA_asmbl_02499: 49438-49584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
2 Hb_003050_260 0.1049148053 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
3 Hb_001195_640 0.1227485705 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
4 Hb_003001_090 0.1318241402 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
5 Hb_000987_040 0.1344750939 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
6 Hb_000331_140 0.1355790617 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
7 Hb_000369_010 0.1374743381 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004324_390 0.1408495964 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
9 Hb_010381_010 0.1418870547 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_005144_210 0.1430203471 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000152_790 0.1481065675 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
12 Hb_000009_610 0.149162104 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
13 Hb_002783_220 0.1495518529 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
14 Hb_002686_080 0.1502240335 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
15 Hb_021495_010 0.1510548377 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002676_120 0.1515137665 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
17 Hb_030982_030 0.151594275 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
18 Hb_039021_010 0.1537794934 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
19 Hb_005901_030 0.1545772435 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
20 Hb_003119_090 0.1546557743 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_010812_070 Hb_010812_070 Hb_003050_260 Hb_003050_260 Hb_010812_070--Hb_003050_260 Hb_001195_640 Hb_001195_640 Hb_010812_070--Hb_001195_640 Hb_003001_090 Hb_003001_090 Hb_010812_070--Hb_003001_090 Hb_000987_040 Hb_000987_040 Hb_010812_070--Hb_000987_040 Hb_000331_140 Hb_000331_140 Hb_010812_070--Hb_000331_140 Hb_000369_010 Hb_000369_010 Hb_010812_070--Hb_000369_010 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_005144_210 Hb_005144_210 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040 Hb_160256_010 Hb_160256_010 Hb_001195_640--Hb_160256_010 Hb_001195_640--Hb_001268_340 Hb_001053_190 Hb_001053_190 Hb_001195_640--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_000916_070 Hb_000916_070 Hb_003001_090--Hb_000916_070 Hb_007017_080 Hb_007017_080 Hb_003001_090--Hb_007017_080 Hb_001124_070 Hb_001124_070 Hb_003001_090--Hb_001124_070 Hb_002960_150 Hb_002960_150 Hb_003001_090--Hb_002960_150 Hb_010381_010 Hb_010381_010 Hb_003001_090--Hb_010381_010 Hb_000227_190 Hb_000227_190 Hb_003001_090--Hb_000227_190 Hb_002676_120 Hb_002676_120 Hb_000987_040--Hb_002676_120 Hb_005333_060 Hb_005333_060 Hb_000987_040--Hb_005333_060 Hb_002783_220 Hb_002783_220 Hb_000987_040--Hb_002783_220 Hb_000987_040--Hb_005754_040 Hb_001633_200 Hb_001633_200 Hb_000987_040--Hb_001633_200 Hb_004125_010 Hb_004125_010 Hb_000987_040--Hb_004125_010 Hb_004013_030 Hb_004013_030 Hb_000331_140--Hb_004013_030 Hb_000154_050 Hb_000154_050 Hb_000331_140--Hb_000154_050 Hb_007786_030 Hb_007786_030 Hb_000331_140--Hb_007786_030 Hb_001450_020 Hb_001450_020 Hb_000331_140--Hb_001450_020 Hb_074399_010 Hb_074399_010 Hb_000331_140--Hb_074399_010 Hb_006588_160 Hb_006588_160 Hb_000331_140--Hb_006588_160 Hb_000340_130 Hb_000340_130 Hb_000369_010--Hb_000340_130 Hb_010080_010 Hb_010080_010 Hb_000369_010--Hb_010080_010 Hb_002284_210 Hb_002284_210 Hb_000369_010--Hb_002284_210 Hb_001277_280 Hb_001277_280 Hb_000369_010--Hb_001277_280 Hb_023765_020 Hb_023765_020 Hb_000369_010--Hb_023765_020 Hb_000959_220 Hb_000959_220 Hb_000369_010--Hb_000959_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4056 1.90519 17.2373 11.6162 4.28655 2.6496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24781 2.95873 3.35716 5.71258 2.15985

CAGE analysis