Hb_023765_020

Information

Type -
Description -
Location Contig23765: 16134-17737
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09330g
description POPTRDRAFT_564278; SNAP25 homologous protein SNAP30
nr
ID XP_011018220.1
description PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
swissprot
ID Q9LMG8
description Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1
trembl
ID A9PB46
description SNAP25 homologous protein SNAP30 OS=Populus trichocarpa GN=POPTR_0008s09330g PE=2 SV=1
Gene Ontology
ID GO:0005634
description snap25 homologous protein snap30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24968: 17713-17929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023765_020 0.0 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
2 Hb_001454_070 0.0968750904 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
3 Hb_001252_240 0.1131635026 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
4 Hb_000369_010 0.1340610792 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000086_700 0.1549317002 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
6 Hb_000260_800 0.1561231545 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
7 Hb_001277_280 0.1596396786 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
8 Hb_100790_010 0.1609170753 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000905_120 0.161954477 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
10 Hb_000197_200 0.1632183794 - - Sec14 cytosolic factor, putative [Ricinus communis]
11 Hb_000120_250 0.1664340486 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
12 Hb_009486_210 0.1673663006 - - -
13 Hb_006132_110 0.1675540245 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010577_030 0.1677605588 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
15 Hb_010080_010 0.1678976406 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
16 Hb_007811_040 0.1684146068 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
17 Hb_004312_010 0.1686394191 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
18 Hb_001950_070 0.1698478057 - - cyclin d, putative [Ricinus communis]
19 Hb_001517_050 0.1712866153 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
20 Hb_002284_150 0.1722210903 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]

Gene co-expression network

sample Hb_023765_020 Hb_023765_020 Hb_001454_070 Hb_001454_070 Hb_023765_020--Hb_001454_070 Hb_001252_240 Hb_001252_240 Hb_023765_020--Hb_001252_240 Hb_000369_010 Hb_000369_010 Hb_023765_020--Hb_000369_010 Hb_000086_700 Hb_000086_700 Hb_023765_020--Hb_000086_700 Hb_000260_800 Hb_000260_800 Hb_023765_020--Hb_000260_800 Hb_001277_280 Hb_001277_280 Hb_023765_020--Hb_001277_280 Hb_001454_070--Hb_001252_240 Hb_001454_070--Hb_000369_010 Hb_100790_010 Hb_100790_010 Hb_001454_070--Hb_100790_010 Hb_001454_070--Hb_000086_700 Hb_171718_020 Hb_171718_020 Hb_001454_070--Hb_171718_020 Hb_000905_120 Hb_000905_120 Hb_001252_240--Hb_000905_120 Hb_007811_040 Hb_007811_040 Hb_001252_240--Hb_007811_040 Hb_010577_030 Hb_010577_030 Hb_001252_240--Hb_010577_030 Hb_001252_240--Hb_000369_010 Hb_010080_010 Hb_010080_010 Hb_001252_240--Hb_010080_010 Hb_000340_130 Hb_000340_130 Hb_000369_010--Hb_000340_130 Hb_000369_010--Hb_010080_010 Hb_002284_210 Hb_002284_210 Hb_000369_010--Hb_002284_210 Hb_000369_010--Hb_001277_280 Hb_000959_220 Hb_000959_220 Hb_000369_010--Hb_000959_220 Hb_006132_110 Hb_006132_110 Hb_000086_700--Hb_006132_110 Hb_004312_010 Hb_004312_010 Hb_000086_700--Hb_004312_010 Hb_000300_260 Hb_000300_260 Hb_000086_700--Hb_000300_260 Hb_003213_010 Hb_003213_010 Hb_000086_700--Hb_003213_010 Hb_011671_310 Hb_011671_310 Hb_000086_700--Hb_011671_310 Hb_001723_150 Hb_001723_150 Hb_000086_700--Hb_001723_150 Hb_001998_120 Hb_001998_120 Hb_000260_800--Hb_001998_120 Hb_002284_150 Hb_002284_150 Hb_000260_800--Hb_002284_150 Hb_000028_070 Hb_000028_070 Hb_000260_800--Hb_000028_070 Hb_012016_010 Hb_012016_010 Hb_000260_800--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_000260_800--Hb_180424_010 Hb_001377_030 Hb_001377_030 Hb_000260_800--Hb_001377_030 Hb_011249_030 Hb_011249_030 Hb_001277_280--Hb_011249_030 Hb_006816_100 Hb_006816_100 Hb_001277_280--Hb_006816_100 Hb_004128_200 Hb_004128_200 Hb_001277_280--Hb_004128_200 Hb_001277_280--Hb_000959_220 Hb_001517_050 Hb_001517_050 Hb_001277_280--Hb_001517_050 Hb_001005_020 Hb_001005_020 Hb_001277_280--Hb_001005_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29063 1.97266 11.7722 4.77067 2.0267 2.75861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16187 4.84992 2.99662 0.94974 0.705642

CAGE analysis