Hb_001252_240

Information

Type -
Description -
Location Contig1252: 345919-347178
Sequence    

Annotation

kegg
ID rcu:RCOM_1469320
description SP1L, putative
nr
ID XP_012080403.1
description PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
swissprot
ID B3H4F1
description Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
trembl
ID A0A067K561
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11742 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein spiral1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07764: 345919-347628 , PASA_asmbl_07765: 347336-347544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_240 0.0 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
2 Hb_023765_020 0.1131635026 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
3 Hb_000905_120 0.1175325011 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
4 Hb_007811_040 0.1276311538 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
5 Hb_010577_030 0.1363403231 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
6 Hb_000369_010 0.1377908775 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010080_010 0.1400381255 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
8 Hb_001517_050 0.145206623 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
9 Hb_002284_150 0.1473979629 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
10 Hb_030627_070 0.1476416956 - - histone H4 [Zea mays]
11 Hb_001454_070 0.1476521624 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
12 Hb_000120_250 0.1494777753 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
13 Hb_004324_390 0.1540095258 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
14 Hb_001277_280 0.1580495587 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
15 Hb_160256_010 0.1594628415 - - -
16 Hb_003077_150 0.159641685 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
17 Hb_002284_210 0.1599137339 - - PREDICTED: protein canopy-1 [Jatropha curcas]
18 Hb_006816_100 0.1601633459 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
19 Hb_000163_100 0.1610790717 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
20 Hb_003556_030 0.1611179021 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001252_240 Hb_001252_240 Hb_023765_020 Hb_023765_020 Hb_001252_240--Hb_023765_020 Hb_000905_120 Hb_000905_120 Hb_001252_240--Hb_000905_120 Hb_007811_040 Hb_007811_040 Hb_001252_240--Hb_007811_040 Hb_010577_030 Hb_010577_030 Hb_001252_240--Hb_010577_030 Hb_000369_010 Hb_000369_010 Hb_001252_240--Hb_000369_010 Hb_010080_010 Hb_010080_010 Hb_001252_240--Hb_010080_010 Hb_001454_070 Hb_001454_070 Hb_023765_020--Hb_001454_070 Hb_023765_020--Hb_000369_010 Hb_000086_700 Hb_000086_700 Hb_023765_020--Hb_000086_700 Hb_000260_800 Hb_000260_800 Hb_023765_020--Hb_000260_800 Hb_001277_280 Hb_001277_280 Hb_023765_020--Hb_001277_280 Hb_007263_010 Hb_007263_010 Hb_000905_120--Hb_007263_010 Hb_001541_110 Hb_001541_110 Hb_000905_120--Hb_001541_110 Hb_003556_030 Hb_003556_030 Hb_000905_120--Hb_003556_030 Hb_003077_150 Hb_003077_150 Hb_000905_120--Hb_003077_150 Hb_000413_060 Hb_000413_060 Hb_000905_120--Hb_000413_060 Hb_007451_040 Hb_007451_040 Hb_000905_120--Hb_007451_040 Hb_000062_330 Hb_000062_330 Hb_007811_040--Hb_000062_330 Hb_007811_040--Hb_010577_030 Hb_000832_190 Hb_000832_190 Hb_007811_040--Hb_000832_190 Hb_004041_020 Hb_004041_020 Hb_007811_040--Hb_004041_020 Hb_003119_060 Hb_003119_060 Hb_007811_040--Hb_003119_060 Hb_000890_130 Hb_000890_130 Hb_007811_040--Hb_000890_130 Hb_007017_080 Hb_007017_080 Hb_010577_030--Hb_007017_080 Hb_003849_130 Hb_003849_130 Hb_010577_030--Hb_003849_130 Hb_001124_070 Hb_001124_070 Hb_010577_030--Hb_001124_070 Hb_026549_020 Hb_026549_020 Hb_010577_030--Hb_026549_020 Hb_001799_030 Hb_001799_030 Hb_010577_030--Hb_001799_030 Hb_000340_130 Hb_000340_130 Hb_000369_010--Hb_000340_130 Hb_000369_010--Hb_010080_010 Hb_002284_210 Hb_002284_210 Hb_000369_010--Hb_002284_210 Hb_000369_010--Hb_001277_280 Hb_000959_220 Hb_000959_220 Hb_000369_010--Hb_000959_220 Hb_000120_250 Hb_000120_250 Hb_010080_010--Hb_000120_250 Hb_100790_010 Hb_100790_010 Hb_010080_010--Hb_100790_010 Hb_000975_240 Hb_000975_240 Hb_010080_010--Hb_000975_240 Hb_011386_050 Hb_011386_050 Hb_010080_010--Hb_011386_050 Hb_010080_010--Hb_001277_280 Hb_010080_010--Hb_000340_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.3718 18.4215 232.857 79.0504 31.4183 43.2047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.7597 67.9577 58.3464 23.3765 32.0746

CAGE analysis