Hb_001454_070

Information

Type -
Description -
Location Contig1454: 54842-57611
Sequence    

Annotation

kegg
ID tcc:TCM_021199
description Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1
nr
ID XP_007035568.1
description Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EW44
description Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 OS=Theobroma cacao GN=TCM_021199 PE=4 SV=1
Gene Ontology
ID GO:0046872
description uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11734: 54812-57590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_070 0.0 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
2 Hb_023765_020 0.0968750904 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
3 Hb_001252_240 0.1476521624 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
4 Hb_000369_010 0.1543283496 - - conserved hypothetical protein [Ricinus communis]
5 Hb_100790_010 0.1632277438 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000086_700 0.1658628914 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
7 Hb_171718_020 0.1662437192 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
8 Hb_001277_280 0.166382187 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
9 Hb_009486_210 0.1667409563 - - -
10 Hb_010080_010 0.1677339774 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
11 Hb_006816_100 0.1691891262 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
12 Hb_000640_050 0.1698527231 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
13 Hb_001950_070 0.1713754148 - - cyclin d, putative [Ricinus communis]
14 Hb_000120_250 0.1721458457 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
15 Hb_001124_070 0.1728042534 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
16 Hb_000975_220 0.1749279293 - - Histone H2B [Medicago truncatula]
17 Hb_000950_070 0.1754662404 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
18 Hb_000905_120 0.176077104 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
19 Hb_007741_130 0.1768652632 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
20 Hb_014231_020 0.1786741763 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]

Gene co-expression network

sample Hb_001454_070 Hb_001454_070 Hb_023765_020 Hb_023765_020 Hb_001454_070--Hb_023765_020 Hb_001252_240 Hb_001252_240 Hb_001454_070--Hb_001252_240 Hb_000369_010 Hb_000369_010 Hb_001454_070--Hb_000369_010 Hb_100790_010 Hb_100790_010 Hb_001454_070--Hb_100790_010 Hb_000086_700 Hb_000086_700 Hb_001454_070--Hb_000086_700 Hb_171718_020 Hb_171718_020 Hb_001454_070--Hb_171718_020 Hb_023765_020--Hb_001252_240 Hb_023765_020--Hb_000369_010 Hb_023765_020--Hb_000086_700 Hb_000260_800 Hb_000260_800 Hb_023765_020--Hb_000260_800 Hb_001277_280 Hb_001277_280 Hb_023765_020--Hb_001277_280 Hb_000905_120 Hb_000905_120 Hb_001252_240--Hb_000905_120 Hb_007811_040 Hb_007811_040 Hb_001252_240--Hb_007811_040 Hb_010577_030 Hb_010577_030 Hb_001252_240--Hb_010577_030 Hb_001252_240--Hb_000369_010 Hb_010080_010 Hb_010080_010 Hb_001252_240--Hb_010080_010 Hb_000340_130 Hb_000340_130 Hb_000369_010--Hb_000340_130 Hb_000369_010--Hb_010080_010 Hb_002284_210 Hb_002284_210 Hb_000369_010--Hb_002284_210 Hb_000369_010--Hb_001277_280 Hb_000959_220 Hb_000959_220 Hb_000369_010--Hb_000959_220 Hb_100790_010--Hb_010080_010 Hb_146255_020 Hb_146255_020 Hb_100790_010--Hb_146255_020 Hb_006061_040 Hb_006061_040 Hb_100790_010--Hb_006061_040 Hb_000120_250 Hb_000120_250 Hb_100790_010--Hb_000120_250 Hb_001950_070 Hb_001950_070 Hb_100790_010--Hb_001950_070 Hb_001500_120 Hb_001500_120 Hb_100790_010--Hb_001500_120 Hb_006132_110 Hb_006132_110 Hb_000086_700--Hb_006132_110 Hb_004312_010 Hb_004312_010 Hb_000086_700--Hb_004312_010 Hb_000300_260 Hb_000300_260 Hb_000086_700--Hb_000300_260 Hb_003213_010 Hb_003213_010 Hb_000086_700--Hb_003213_010 Hb_011671_310 Hb_011671_310 Hb_000086_700--Hb_011671_310 Hb_001723_150 Hb_001723_150 Hb_000086_700--Hb_001723_150 Hb_000363_350 Hb_000363_350 Hb_171718_020--Hb_000363_350 Hb_001307_190 Hb_001307_190 Hb_171718_020--Hb_001307_190 Hb_000011_050 Hb_000011_050 Hb_171718_020--Hb_000011_050 Hb_014231_020 Hb_014231_020 Hb_171718_020--Hb_014231_020 Hb_000000_340 Hb_000000_340 Hb_171718_020--Hb_000000_340 Hb_000617_310 Hb_000617_310 Hb_171718_020--Hb_000617_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72919 6.1995 33.1035 13.4359 4.78502 6.92122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.56939 11.0773 3.91367 4.01829 1.05572

CAGE analysis