Hb_171718_020

Information

Type -
Description -
Location Contig171718: 4535-5718
Sequence    

Annotation

kegg
ID egr:104428992
description uncharacterized LOC104428992
nr
ID KDP42477.1
description hypothetical protein JCGZ_00274 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L212
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00274 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171718_020 0.0 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
2 Hb_000363_350 0.0852306498 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
3 Hb_001307_190 0.1233184564 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_000011_050 0.1252856186 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
5 Hb_014231_020 0.1334098882 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
6 Hb_000000_340 0.1351719871 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
7 Hb_000617_310 0.1380259087 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
8 Hb_000925_030 0.1414643519 - - ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_010789_020 0.143554273 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
10 Hb_009449_060 0.1457012845 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
11 Hb_006452_180 0.1474865808 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
12 Hb_001191_080 0.1490903586 - - protein with unknown function [Ricinus communis]
13 Hb_000580_100 0.1496287719 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
14 Hb_000002_240 0.1499029075 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
15 Hb_164945_010 0.1509408597 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
16 Hb_002311_480 0.1520932331 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
17 Hb_003305_030 0.1523374677 - - -
18 Hb_156635_020 0.1524408735 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
19 Hb_004096_160 0.1535722091 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
20 Hb_005144_210 0.1536347299 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_171718_020 Hb_171718_020 Hb_000363_350 Hb_000363_350 Hb_171718_020--Hb_000363_350 Hb_001307_190 Hb_001307_190 Hb_171718_020--Hb_001307_190 Hb_000011_050 Hb_000011_050 Hb_171718_020--Hb_000011_050 Hb_014231_020 Hb_014231_020 Hb_171718_020--Hb_014231_020 Hb_000000_340 Hb_000000_340 Hb_171718_020--Hb_000000_340 Hb_000617_310 Hb_000617_310 Hb_171718_020--Hb_000617_310 Hb_000363_350--Hb_014231_020 Hb_000363_350--Hb_000011_050 Hb_000363_350--Hb_001307_190 Hb_000363_350--Hb_000000_340 Hb_000062_360 Hb_000062_360 Hb_000363_350--Hb_000062_360 Hb_001307_190--Hb_014231_020 Hb_000703_160 Hb_000703_160 Hb_001307_190--Hb_000703_160 Hb_000958_080 Hb_000958_080 Hb_001307_190--Hb_000958_080 Hb_001307_190--Hb_000617_310 Hb_005144_210 Hb_005144_210 Hb_001307_190--Hb_005144_210 Hb_009449_060 Hb_009449_060 Hb_001307_190--Hb_009449_060 Hb_000291_030 Hb_000291_030 Hb_000011_050--Hb_000291_030 Hb_000925_030 Hb_000925_030 Hb_000011_050--Hb_000925_030 Hb_000979_060 Hb_000979_060 Hb_000011_050--Hb_000979_060 Hb_174829_020 Hb_174829_020 Hb_000011_050--Hb_174829_020 Hb_002311_480 Hb_002311_480 Hb_000011_050--Hb_002311_480 Hb_004712_190 Hb_004712_190 Hb_014231_020--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_014231_020--Hb_000703_160 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_000890_160 Hb_000890_160 Hb_000000_340--Hb_000890_160 Hb_010068_070 Hb_010068_070 Hb_000000_340--Hb_010068_070 Hb_000866_140 Hb_000866_140 Hb_000000_340--Hb_000866_140 Hb_004837_220 Hb_004837_220 Hb_000000_340--Hb_004837_220 Hb_001376_010 Hb_001376_010 Hb_000000_340--Hb_001376_010 Hb_008725_050 Hb_008725_050 Hb_000000_340--Hb_008725_050 Hb_001863_140 Hb_001863_140 Hb_000617_310--Hb_001863_140 Hb_039021_010 Hb_039021_010 Hb_000617_310--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_000617_310--Hb_000345_510 Hb_004096_160 Hb_004096_160 Hb_000617_310--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_000617_310--Hb_002909_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27235 3.57163 5.51985 3.02671 1.32657 1.35699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6034 2.13063 0.557559 1.61159 0.353958

CAGE analysis