Hb_000000_340

Information

Type transcription factor
Description TF Family: NAC
Location Contig0: 599552-606628
Sequence    

Annotation

kegg
ID rcu:RCOM_1593730
description hypothetical protein
nr
ID XP_012071780.1
description PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
swissprot
ID Q949N0
description NAC domain-containing protein 53 OS=Arabidopsis thaliana GN=NAC053 PE=2 SV=1
trembl
ID R4N7U0
description NAC transcription factor 097 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac transcription factor 29-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00082: 599589-605281 , PASA_asmbl_00083: 599589-605275 , PASA_asmbl_00084: 599589-605275 , PASA_asmbl_00085: 600223-601062 , PASA_asmbl_00086: 603337-603496
cDNA
(Sanger)
(ID:Location)		 019_I07.ab1: 602577-605281 , 040_C08.ab1: 601493-605281

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_340 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
2 Hb_000890_160 0.1156818869 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
3 Hb_010068_070 0.1158780881 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_000866_140 0.1200452008 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
5 Hb_004837_220 0.1216284264 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
6 Hb_001376_010 0.1228170374 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
7 Hb_008725_050 0.124234738 - - syntaxin, putative [Ricinus communis]
8 Hb_000363_350 0.1246287036 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
9 Hb_003428_090 0.1252294142 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
10 Hb_002686_150 0.125860965 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_001085_300 0.1260532413 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
12 Hb_006452_180 0.1270286585 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
13 Hb_000796_120 0.1270485172 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
14 Hb_000638_280 0.1280748836 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_000156_090 0.1295435635 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
16 Hb_004526_010 0.1312272596 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
17 Hb_000048_080 0.1312474185 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
18 Hb_171718_020 0.1351719871 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
19 Hb_156635_020 0.1362471678 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
20 Hb_056196_060 0.1369538255 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_000000_340 Hb_000000_340 Hb_000890_160 Hb_000890_160 Hb_000000_340--Hb_000890_160 Hb_010068_070 Hb_010068_070 Hb_000000_340--Hb_010068_070 Hb_000866_140 Hb_000866_140 Hb_000000_340--Hb_000866_140 Hb_004837_220 Hb_004837_220 Hb_000000_340--Hb_004837_220 Hb_001376_010 Hb_001376_010 Hb_000000_340--Hb_001376_010 Hb_008725_050 Hb_008725_050 Hb_000000_340--Hb_008725_050 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_000890_160--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_000890_160--Hb_003428_090 Hb_003687_120 Hb_003687_120 Hb_000890_160--Hb_003687_120 Hb_000890_160--Hb_000866_140 Hb_000890_160--Hb_010068_070 Hb_009372_020 Hb_009372_020 Hb_010068_070--Hb_009372_020 Hb_060094_010 Hb_060094_010 Hb_010068_070--Hb_060094_010 Hb_000156_090 Hb_000156_090 Hb_010068_070--Hb_000156_090 Hb_033363_010 Hb_033363_010 Hb_010068_070--Hb_033363_010 Hb_002965_050 Hb_002965_050 Hb_010068_070--Hb_002965_050 Hb_000866_140--Hb_003428_090 Hb_003018_030 Hb_003018_030 Hb_000866_140--Hb_003018_030 Hb_000866_140--Hb_000156_090 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_163968_010 Hb_163968_010 Hb_004837_220--Hb_163968_010 Hb_005000_140 Hb_005000_140 Hb_004837_220--Hb_005000_140 Hb_010368_080 Hb_010368_080 Hb_004837_220--Hb_010368_080 Hb_004267_060 Hb_004267_060 Hb_004837_220--Hb_004267_060 Hb_001085_300 Hb_001085_300 Hb_004837_220--Hb_001085_300 Hb_000035_050 Hb_000035_050 Hb_001376_010--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004117_170 Hb_004117_170 Hb_001376_010--Hb_004117_170 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_001376_010--Hb_002965_050 Hb_001376_010--Hb_000156_090 Hb_008725_050--Hb_003687_120 Hb_006452_180 Hb_006452_180 Hb_008725_050--Hb_006452_180 Hb_000956_040 Hb_000956_040 Hb_008725_050--Hb_000956_040 Hb_008725_050--Hb_000156_090 Hb_008725_050--Hb_003428_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6023 59.6677 61.1156 39.3949 9.64183 20.5107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5854 14.4774 6.7365 28.2064 11.1519

CAGE analysis