Hb_174829_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig174829: 11035-14772
Sequence    

Annotation

kegg
ID rcu:RCOM_0340230
description zinc finger protein, putative
nr
ID NP_001295631.1
description cyclic dof factor 2 [Jatropha curcas]
swissprot
ID Q93ZL5
description Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
trembl
ID D8UXL4
description DNA binding with one finger 1 OS=Jatropha curcas GN=Dof1 PE=2 SV=1
Gene Ontology
ID GO:0003677
description cyclic dof factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16635: 11372-14761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174829_020 0.0 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
2 Hb_000512_010 0.0850176134 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
3 Hb_002311_480 0.1173107252 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
4 Hb_000291_010 0.1189560504 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
5 Hb_052764_030 0.119812655 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
6 Hb_000019_040 0.1205563935 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
7 Hb_000011_050 0.1228156108 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
8 Hb_000291_030 0.1270826264 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
9 Hb_000638_280 0.1294883469 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
10 Hb_000579_190 0.12959366 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
11 Hb_002301_170 0.1307270113 - - MAC/Perforin domain-containing protein [Theobroma cacao]
12 Hb_004236_030 0.1323600512 - - unknown [Lotus japonicus]
13 Hb_000375_290 0.1324117707 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_008695_090 0.1330697935 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
15 Hb_001104_170 0.1348634365 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
16 Hb_011631_010 0.1348770971 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
17 Hb_004635_030 0.1365751957 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
18 Hb_014068_050 0.1378432321 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
19 Hb_000979_060 0.1382609363 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
20 Hb_004943_030 0.139220916 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_174829_020 Hb_174829_020 Hb_000512_010 Hb_000512_010 Hb_174829_020--Hb_000512_010 Hb_002311_480 Hb_002311_480 Hb_174829_020--Hb_002311_480 Hb_000291_010 Hb_000291_010 Hb_174829_020--Hb_000291_010 Hb_052764_030 Hb_052764_030 Hb_174829_020--Hb_052764_030 Hb_000019_040 Hb_000019_040 Hb_174829_020--Hb_000019_040 Hb_000011_050 Hb_000011_050 Hb_174829_020--Hb_000011_050 Hb_001104_170 Hb_001104_170 Hb_000512_010--Hb_001104_170 Hb_000512_010--Hb_000019_040 Hb_000512_010--Hb_052764_030 Hb_014068_050 Hb_014068_050 Hb_000512_010--Hb_014068_050 Hb_000512_010--Hb_000291_010 Hb_001500_120 Hb_001500_120 Hb_002311_480--Hb_001500_120 Hb_011671_310 Hb_011671_310 Hb_002311_480--Hb_011671_310 Hb_000979_060 Hb_000979_060 Hb_002311_480--Hb_000979_060 Hb_005977_030 Hb_005977_030 Hb_002311_480--Hb_005977_030 Hb_004943_030 Hb_004943_030 Hb_002311_480--Hb_004943_030 Hb_000048_080 Hb_000048_080 Hb_002311_480--Hb_000048_080 Hb_000291_010--Hb_001104_170 Hb_012239_020 Hb_012239_020 Hb_000291_010--Hb_012239_020 Hb_005018_020 Hb_005018_020 Hb_000291_010--Hb_005018_020 Hb_060094_020 Hb_060094_020 Hb_000291_010--Hb_060094_020 Hb_001279_170 Hb_001279_170 Hb_000291_010--Hb_001279_170 Hb_000086_420 Hb_000086_420 Hb_000291_010--Hb_000086_420 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_009486_160 Hb_009486_160 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_002301_170 Hb_002301_170 Hb_052764_030--Hb_002301_170 Hb_052764_030--Hb_001104_170 Hb_052764_030--Hb_000291_010 Hb_000976_280 Hb_000976_280 Hb_000019_040--Hb_000976_280 Hb_006788_140 Hb_006788_140 Hb_000019_040--Hb_006788_140 Hb_001766_020 Hb_001766_020 Hb_000019_040--Hb_001766_020 Hb_000019_040--Hb_052764_030 Hb_000019_040--Hb_001104_170 Hb_000291_030 Hb_000291_030 Hb_000011_050--Hb_000291_030 Hb_000925_030 Hb_000925_030 Hb_000011_050--Hb_000925_030 Hb_000363_350 Hb_000363_350 Hb_000011_050--Hb_000363_350 Hb_000011_050--Hb_000979_060 Hb_000011_050--Hb_002311_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.0533 92.7184 83.4 24.2374 14.487 20.3414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0692 30.3926 36.2748 37.2276 12.5201

CAGE analysis