Hb_000692_210

Information

Type -
Description -
Location Contig692: 172340-173398
Sequence    

Annotation

kegg
ID rcu:RCOM_1599550
description s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase, putative (EC:2.1.1.143)
nr
ID XP_012073720.1
description PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
swissprot
ID Q39227
description 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2
trembl
ID A0A067KKU8
description Methyltransferase OS=Jatropha curcas GN=JCGZ_08162 PE=3 SV=1
Gene Ontology
ID GO:0030797
description 24-methylenesterol c-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54459: 172231-173445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_210 0.0 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
2 Hb_002518_200 0.1131455324 - - Proliferating cell nuclear antigen [Theobroma cacao]
3 Hb_004837_220 0.1225243388 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
4 Hb_003747_050 0.1345965149 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
5 Hb_000003_740 0.1358530957 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
6 Hb_005000_140 0.136341967 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
7 Hb_080147_020 0.1458133362 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
8 Hb_114943_020 0.1458443985 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
9 Hb_005833_030 0.1470650583 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
10 Hb_003305_030 0.1484096198 - - -
11 Hb_156635_020 0.1487430743 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
12 Hb_002600_130 0.1491366236 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
13 Hb_000098_150 0.1503712507 - - DNA helicase hus2, putative [Ricinus communis]
14 Hb_000077_440 0.1514449813 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
15 Hb_009659_030 0.1558485731 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
16 Hb_007777_010 0.1566522031 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
17 Hb_005394_010 0.1598759826 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
18 Hb_000062_360 0.1610598396 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
19 Hb_000959_190 0.1611628874 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
20 Hb_004920_050 0.1615420981 - - DNA replication licensing factor MCM7, putative [Ricinus communis]

Gene co-expression network

sample Hb_000692_210 Hb_000692_210 Hb_002518_200 Hb_002518_200 Hb_000692_210--Hb_002518_200 Hb_004837_220 Hb_004837_220 Hb_000692_210--Hb_004837_220 Hb_003747_050 Hb_003747_050 Hb_000692_210--Hb_003747_050 Hb_000003_740 Hb_000003_740 Hb_000692_210--Hb_000003_740 Hb_005000_140 Hb_005000_140 Hb_000692_210--Hb_005000_140 Hb_080147_020 Hb_080147_020 Hb_000692_210--Hb_080147_020 Hb_000181_270 Hb_000181_270 Hb_002518_200--Hb_000181_270 Hb_004920_050 Hb_004920_050 Hb_002518_200--Hb_004920_050 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030 Hb_163968_010 Hb_163968_010 Hb_004837_220--Hb_163968_010 Hb_004837_220--Hb_005000_140 Hb_010368_080 Hb_010368_080 Hb_004837_220--Hb_010368_080 Hb_004267_060 Hb_004267_060 Hb_004837_220--Hb_004267_060 Hb_001085_300 Hb_001085_300 Hb_004837_220--Hb_001085_300 Hb_000000_340 Hb_000000_340 Hb_004837_220--Hb_000000_340 Hb_000803_090 Hb_000803_090 Hb_003747_050--Hb_000803_090 Hb_011671_110 Hb_011671_110 Hb_003747_050--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_003747_050--Hb_047442_010 Hb_012787_030 Hb_012787_030 Hb_003747_050--Hb_012787_030 Hb_002600_130 Hb_002600_130 Hb_003747_050--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_003747_050--Hb_000317_190 Hb_000003_740--Hb_004920_050 Hb_148346_010 Hb_148346_010 Hb_000003_740--Hb_148346_010 Hb_114943_020 Hb_114943_020 Hb_000003_740--Hb_114943_020 Hb_000015_150 Hb_000015_150 Hb_000003_740--Hb_000015_150 Hb_156635_020 Hb_156635_020 Hb_005000_140--Hb_156635_020 Hb_000012_210 Hb_000012_210 Hb_005000_140--Hb_000012_210 Hb_152910_010 Hb_152910_010 Hb_005000_140--Hb_152910_010 Hb_005649_090 Hb_005649_090 Hb_005000_140--Hb_005649_090 Hb_005000_140--Hb_001085_300 Hb_000567_090 Hb_000567_090 Hb_080147_020--Hb_000567_090 Hb_002411_160 Hb_002411_160 Hb_080147_020--Hb_002411_160 Hb_086639_050 Hb_086639_050 Hb_080147_020--Hb_086639_050 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7797 40.3442 81.3118 47.4876 11.4689 12.5979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57046 7.05476 3.63537 29.9431 8.15987

CAGE analysis