Hb_000134_030

Information

Type -
Description -
Location Contig134: 18153-21770
Sequence    

Annotation

kegg
ID rcu:RCOM_1526820
description cohesin subunit rad21, putative
nr
ID XP_012065510.1
description PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
swissprot
ID Q9FQ19
description Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2
trembl
ID B9RHH5
description Cohesin subunit rad21, putative OS=Ricinus communis GN=RCOM_1526820 PE=4 SV=1
Gene Ontology
ID GO:0031981
description sister chromatid cohesion 1 protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09584: 17932-19640 , PASA_asmbl_09585: 17382-18228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_030 0.0 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
2 Hb_008173_060 0.1288140082 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
3 Hb_002400_050 0.1352721225 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
4 Hb_124951_010 0.1386182101 - - chitinase-like protein [Hevea brasiliensis]
5 Hb_002518_200 0.1401492172 - - Proliferating cell nuclear antigen [Theobroma cacao]
6 Hb_000260_610 0.1468232147 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
7 Hb_000890_020 0.1518700235 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_163968_010 0.1528250523 - - vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_176472_020 0.1613842733 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001214_190 0.1680515997 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
11 Hb_000959_190 0.1693021002 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
12 Hb_002217_190 0.1730956562 - - invertase [Hevea brasiliensis]
13 Hb_007545_110 0.1740093119 - - catalytic, putative [Ricinus communis]
14 Hb_006775_070 0.1743776521 - - zinc finger protein, putative [Ricinus communis]
15 Hb_005394_010 0.1743810373 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
16 Hb_000732_030 0.1751437382 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012787_030 0.1766101022 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
18 Hb_002600_130 0.1768092207 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
19 Hb_003747_050 0.1771313172 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
20 Hb_000162_130 0.1775803962 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000134_030 Hb_000134_030 Hb_008173_060 Hb_008173_060 Hb_000134_030--Hb_008173_060 Hb_002400_050 Hb_002400_050 Hb_000134_030--Hb_002400_050 Hb_124951_010 Hb_124951_010 Hb_000134_030--Hb_124951_010 Hb_002518_200 Hb_002518_200 Hb_000134_030--Hb_002518_200 Hb_000260_610 Hb_000260_610 Hb_000134_030--Hb_000260_610 Hb_000890_020 Hb_000890_020 Hb_000134_030--Hb_000890_020 Hb_002217_190 Hb_002217_190 Hb_008173_060--Hb_002217_190 Hb_004452_090 Hb_004452_090 Hb_008173_060--Hb_004452_090 Hb_176472_020 Hb_176472_020 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030 Hb_002400_050--Hb_000890_020 Hb_002400_050--Hb_000260_610 Hb_002400_050--Hb_007545_110 Hb_002400_050--Hb_002518_200 Hb_000181_270 Hb_000181_270 Hb_002400_050--Hb_000181_270 Hb_002600_130 Hb_002600_130 Hb_124951_010--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_124951_010--Hb_000317_190 Hb_000076_100 Hb_000076_100 Hb_124951_010--Hb_000076_100 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_001214_190 Hb_001214_190 Hb_124951_010--Hb_001214_190 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_002518_200--Hb_000181_270 Hb_004920_050 Hb_004920_050 Hb_002518_200--Hb_004920_050 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_000260_610--Hb_007545_110 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_000260_610--Hb_004920_050 Hb_000890_020--Hb_004920_050 Hb_002540_070 Hb_002540_070 Hb_000890_020--Hb_002540_070 Hb_000086_180 Hb_000086_180 Hb_000890_020--Hb_000086_180 Hb_000008_390 Hb_000008_390 Hb_000890_020--Hb_000008_390 Hb_000890_020--Hb_000181_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198349 0.912354 2.4313 0.846265 0.0845671 0.313332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.065384 0.188638 0.0976405 0.279644 0.108825

CAGE analysis