Hb_000003_060

Information

Type transcription factor
Description TF Family: HMG
Location Contig3: 26397-28656
Sequence    

Annotation

kegg
ID rcu:RCOM_1454160
description DNA-binding protein MNB1B, putative
nr
ID XP_002513135.1
description DNA-binding protein MNB1B, putative [Ricinus communis]
swissprot
ID Q8LDF9
description High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1
trembl
ID B9RGI3
description DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_1454160 PE=4 SV=1
Gene Ontology
ID GO:0003677
description high mobility group b protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31359: 26401-28531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_060 0.0 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
2 Hb_093458_020 0.1118900688 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
3 Hb_004968_040 0.1145387391 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
4 Hb_000288_090 0.1271700197 - - unnamed protein product [Vitis vinifera]
5 Hb_010436_080 0.128253284 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
6 Hb_006970_130 0.1303035077 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
7 Hb_000057_190 0.1319838296 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004007_130 0.1336821501 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
9 Hb_001322_160 0.1401883039 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
10 Hb_001328_070 0.1413234775 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
11 Hb_000365_210 0.1423625898 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
12 Hb_002284_260 0.1451314874 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
13 Hb_002311_090 0.1465842558 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
14 Hb_020301_020 0.1499320698 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_124677_050 0.1537420605 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002871_130 0.155403328 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
17 Hb_000960_090 0.1566281896 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007632_210 0.1577141163 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
19 Hb_001780_080 0.1599607341 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
20 Hb_001584_360 0.1616664263 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_060 Hb_000003_060 Hb_093458_020 Hb_093458_020 Hb_000003_060--Hb_093458_020 Hb_004968_040 Hb_004968_040 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_010436_080 Hb_010436_080 Hb_000003_060--Hb_010436_080 Hb_006970_130 Hb_006970_130 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_002284_260 Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_000566_130 Hb_000566_130 Hb_093458_020--Hb_000566_130 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_000077_110 Hb_000077_110 Hb_093458_020--Hb_000077_110 Hb_093458_020--Hb_004968_040 Hb_004968_040--Hb_000077_110 Hb_004968_040--Hb_002284_260 Hb_004968_040--Hb_006970_130 Hb_004968_040--Hb_010436_080 Hb_000181_270 Hb_000181_270 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_000288_090--Hb_006970_130 Hb_000260_650 Hb_000260_650 Hb_000288_090--Hb_000260_650 Hb_004920_050 Hb_004920_050 Hb_000288_090--Hb_004920_050 Hb_000190_220 Hb_000190_220 Hb_010436_080--Hb_000190_220 Hb_002078_230 Hb_002078_230 Hb_010436_080--Hb_002078_230 Hb_009339_040 Hb_009339_040 Hb_010436_080--Hb_009339_040 Hb_010436_080--Hb_006970_130 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_000563_180 Hb_000563_180 Hb_000057_190--Hb_000563_180 Hb_001780_080 Hb_001780_080 Hb_000057_190--Hb_001780_080 Hb_000057_190--Hb_010436_080 Hb_000057_190--Hb_093458_020 Hb_001080_050 Hb_001080_050 Hb_000057_190--Hb_001080_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13336 1.69378 27.9252 16.9251 0.559315 0.289573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87679 1.44272 0.373668 7.98998 1.03906

CAGE analysis