Hb_003674_020

Information

Type -
Description -
Location Contig3674: 26728-33011
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12380g
description POPTRDRAFT_797236; hypothetical protein
nr
ID XP_012075497.1
description PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
swissprot
ID F4KAB8
description DNA replication licensing factor MCM6 OS=Arabidopsis thaliana GN=MCM6 PE=1 SV=1
trembl
ID A0A067KG31
description DNA helicase OS=Jatropha curcas GN=JCGZ_11001 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna replication licensing factor mcm6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37779: 26805-31342 , PASA_asmbl_37780: 31432-32985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003674_020 0.0 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
2 Hb_007590_110 0.1405199835 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
3 Hb_129996_010 0.1461651235 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
4 Hb_004846_080 0.1566421412 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
5 Hb_001476_130 0.1574594446 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
6 Hb_000696_030 0.1617696074 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
7 Hb_001782_100 0.1620106966 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_000417_140 0.1626286462 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
9 Hb_005839_030 0.1633250777 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
10 Hb_001157_190 0.1650064865 - - PREDICTED: protein YLS3 [Jatropha curcas]
11 Hb_002217_040 0.165314922 - - PREDICTED: boron transporter 1-like [Jatropha curcas]
12 Hb_005618_130 0.167875199 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_006711_040 0.1746815554 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
14 Hb_001195_740 0.1757254033 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
15 Hb_001252_070 0.1789172669 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
16 Hb_000077_110 0.1876822118 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
17 Hb_001040_080 0.1877553593 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
18 Hb_000307_220 0.190183909 - - oxidoreductase family protein [Populus trichocarpa]
19 Hb_008143_060 0.1907754625 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
20 Hb_002592_050 0.1925149147 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003674_020 Hb_003674_020 Hb_007590_110 Hb_007590_110 Hb_003674_020--Hb_007590_110 Hb_129996_010 Hb_129996_010 Hb_003674_020--Hb_129996_010 Hb_004846_080 Hb_004846_080 Hb_003674_020--Hb_004846_080 Hb_001476_130 Hb_001476_130 Hb_003674_020--Hb_001476_130 Hb_000696_030 Hb_000696_030 Hb_003674_020--Hb_000696_030 Hb_001782_100 Hb_001782_100 Hb_003674_020--Hb_001782_100 Hb_007590_110--Hb_001782_100 Hb_000316_060 Hb_000316_060 Hb_007590_110--Hb_000316_060 Hb_024682_030 Hb_024682_030 Hb_007590_110--Hb_024682_030 Hb_007590_110--Hb_129996_010 Hb_006351_030 Hb_006351_030 Hb_007590_110--Hb_006351_030 Hb_000417_140 Hb_000417_140 Hb_007590_110--Hb_000417_140 Hb_129996_010--Hb_001782_100 Hb_129996_010--Hb_024682_030 Hb_129996_010--Hb_000417_140 Hb_129996_010--Hb_006351_030 Hb_000465_130 Hb_000465_130 Hb_004846_080--Hb_000465_130 Hb_006711_040 Hb_006711_040 Hb_004846_080--Hb_006711_040 Hb_008143_060 Hb_008143_060 Hb_004846_080--Hb_008143_060 Hb_001832_140 Hb_001832_140 Hb_004846_080--Hb_001832_140 Hb_005839_030 Hb_005839_030 Hb_004846_080--Hb_005839_030 Hb_004846_080--Hb_001782_100 Hb_002871_130 Hb_002871_130 Hb_001476_130--Hb_002871_130 Hb_000120_300 Hb_000120_300 Hb_001476_130--Hb_000120_300 Hb_000483_080 Hb_000483_080 Hb_001476_130--Hb_000483_080 Hb_002918_120 Hb_002918_120 Hb_001476_130--Hb_002918_120 Hb_000077_110 Hb_000077_110 Hb_001476_130--Hb_000077_110 Hb_001157_190 Hb_001157_190 Hb_000696_030--Hb_001157_190 Hb_001776_070 Hb_001776_070 Hb_000696_030--Hb_001776_070 Hb_005679_110 Hb_005679_110 Hb_000696_030--Hb_005679_110 Hb_000696_030--Hb_005839_030 Hb_001195_740 Hb_001195_740 Hb_000696_030--Hb_001195_740 Hb_005144_080 Hb_005144_080 Hb_000696_030--Hb_005144_080 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_001782_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.683113 1.10973 7.21085 6.99863 0.961588 0.224672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0324354 0 0.024367 5.12573 1.27715

CAGE analysis