Hb_004846_080

Information

Type -
Description -
Location Contig4846: 104711-110421
Sequence    

Annotation

kegg
ID rcu:RCOM_0633290
description DNA replication licensing factor MCM3, putative
nr
ID XP_002519706.1
description DNA replication licensing factor MCM3, putative [Ricinus communis]
swissprot
ID Q9FL33
description DNA replication licensing factor MCM3 OS=Arabidopsis thaliana GN=MCM3 PE=1 SV=1
trembl
ID B9S137
description DNA helicase OS=Ricinus communis GN=RCOM_0633290 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna replication licensing factor mcm3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44918: 106585-108219 , PASA_asmbl_44919: 110080-110292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_080 0.0 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
2 Hb_000465_130 0.1167033236 transcription factor TF Family: ERF hypothetical protein POPTR_0001s15550g [Populus trichocarpa]
3 Hb_006711_040 0.120086376 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
4 Hb_008143_060 0.1226376024 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
5 Hb_001832_140 0.1325315836 - - endomembrane protein 70 family protein [Medicago truncatula]
6 Hb_005839_030 0.1364383231 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
7 Hb_001782_100 0.1367092082 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_001195_740 0.1418611604 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
9 Hb_000749_120 0.1452714558 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
10 Hb_027556_060 0.1458966614 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
11 Hb_000417_140 0.1472891747 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
12 Hb_001252_050 0.147485761 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
13 Hb_001157_190 0.148238312 - - PREDICTED: protein YLS3 [Jatropha curcas]
14 Hb_000490_040 0.1486632448 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
15 Hb_000535_040 0.1526385496 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
16 Hb_001776_070 0.1547285308 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
17 Hb_000696_030 0.1559017223 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
18 Hb_003674_020 0.1566421412 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
19 Hb_005144_080 0.1587355126 - - Serine carboxypeptidase, putative [Ricinus communis]
20 Hb_001252_070 0.1611130858 - - hypothetical protein JCGZ_01385 [Jatropha curcas]

Gene co-expression network

sample Hb_004846_080 Hb_004846_080 Hb_000465_130 Hb_000465_130 Hb_004846_080--Hb_000465_130 Hb_006711_040 Hb_006711_040 Hb_004846_080--Hb_006711_040 Hb_008143_060 Hb_008143_060 Hb_004846_080--Hb_008143_060 Hb_001832_140 Hb_001832_140 Hb_004846_080--Hb_001832_140 Hb_005839_030 Hb_005839_030 Hb_004846_080--Hb_005839_030 Hb_001782_100 Hb_001782_100 Hb_004846_080--Hb_001782_100 Hb_000465_130--Hb_001832_140 Hb_000465_130--Hb_008143_060 Hb_001195_740 Hb_001195_740 Hb_000465_130--Hb_001195_740 Hb_001776_070 Hb_001776_070 Hb_000465_130--Hb_001776_070 Hb_001252_050 Hb_001252_050 Hb_000465_130--Hb_001252_050 Hb_000343_220 Hb_000343_220 Hb_006711_040--Hb_000343_220 Hb_000490_040 Hb_000490_040 Hb_006711_040--Hb_000490_040 Hb_006711_040--Hb_008143_060 Hb_006711_040--Hb_001252_050 Hb_006711_040--Hb_001832_140 Hb_000272_010 Hb_000272_010 Hb_006711_040--Hb_000272_010 Hb_008143_060--Hb_001195_740 Hb_008143_060--Hb_001832_140 Hb_008143_060--Hb_001252_050 Hb_000696_250 Hb_000696_250 Hb_008143_060--Hb_000696_250 Hb_001832_140--Hb_000696_250 Hb_001832_140--Hb_001195_740 Hb_001832_140--Hb_001252_050 Hb_002592_050 Hb_002592_050 Hb_005839_030--Hb_002592_050 Hb_000696_030 Hb_000696_030 Hb_005839_030--Hb_000696_030 Hb_001157_190 Hb_001157_190 Hb_005839_030--Hb_001157_190 Hb_005144_080 Hb_005144_080 Hb_005839_030--Hb_005144_080 Hb_011129_020 Hb_011129_020 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100 Hb_006351_030 Hb_006351_030 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_007590_110 Hb_007590_110 Hb_001782_100--Hb_007590_110 Hb_024682_030 Hb_024682_030 Hb_001782_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0607323 0.517226 3.94209 4.11107 0.0550492 0.283073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0162566 0 0.0976975 3.224 0.626455

CAGE analysis