Hb_007590_110

Information

Type -
Description -
Location Contig7590: 80243-83907
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25940g
description POPTRDRAFT_1067898; hypothetical protein
nr
ID XP_012068657.1
description PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID A0A067LNN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08457 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57179: 78366-80268 , PASA_asmbl_57182: 82419-82632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007590_110 0.0 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
2 Hb_001782_100 0.1042972755 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_000316_060 0.1217352766 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
4 Hb_024682_030 0.1292690337 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
5 Hb_129996_010 0.1301688167 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
6 Hb_006351_030 0.1310594061 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
7 Hb_000417_140 0.1403047108 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
8 Hb_003674_020 0.1405199835 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
9 Hb_000878_120 0.1409902898 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
10 Hb_000152_590 0.1503623112 - - PREDICTED: 21 kDa protein [Jatropha curcas]
11 Hb_008725_100 0.1526952812 - - PREDICTED: histone H1-like [Jatropha curcas]
12 Hb_000592_100 0.1540585117 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
13 Hb_001040_080 0.1544800262 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
14 Hb_000024_150 0.1555494845 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
15 Hb_000046_240 0.1557973553 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
16 Hb_003055_080 0.1594886456 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
17 Hb_004846_080 0.1635735587 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
18 Hb_001019_160 0.1648476989 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001025_100 0.1653355377 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
20 Hb_003875_040 0.1663884005 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_007590_110 Hb_007590_110 Hb_001782_100 Hb_001782_100 Hb_007590_110--Hb_001782_100 Hb_000316_060 Hb_000316_060 Hb_007590_110--Hb_000316_060 Hb_024682_030 Hb_024682_030 Hb_007590_110--Hb_024682_030 Hb_129996_010 Hb_129996_010 Hb_007590_110--Hb_129996_010 Hb_006351_030 Hb_006351_030 Hb_007590_110--Hb_006351_030 Hb_000417_140 Hb_000417_140 Hb_007590_110--Hb_000417_140 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_001782_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040 Hb_000996_040 Hb_000996_040 Hb_000316_060--Hb_000996_040 Hb_003687_040 Hb_003687_040 Hb_000316_060--Hb_003687_040 Hb_001040_080 Hb_001040_080 Hb_000316_060--Hb_001040_080 Hb_001019_160 Hb_001019_160 Hb_000316_060--Hb_001019_160 Hb_002897_010 Hb_002897_010 Hb_000316_060--Hb_002897_010 Hb_003360_010 Hb_003360_010 Hb_024682_030--Hb_003360_010 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_000431_100 Hb_000431_100 Hb_024682_030--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_129996_010--Hb_001782_100 Hb_129996_010--Hb_024682_030 Hb_129996_010--Hb_000417_140 Hb_129996_010--Hb_006351_030 Hb_003674_020 Hb_003674_020 Hb_129996_010--Hb_003674_020 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_006351_030--Hb_000152_590 Hb_000878_120 Hb_000878_120 Hb_006351_030--Hb_000878_120 Hb_006916_120 Hb_006916_120 Hb_006351_030--Hb_006916_120 Hb_001252_050 Hb_001252_050 Hb_000417_140--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000417_140--Hb_006711_040 Hb_000272_010 Hb_000272_010 Hb_000417_140--Hb_000272_010 Hb_008143_050 Hb_008143_050 Hb_000417_140--Hb_008143_050 Hb_000417_140--Hb_024682_030 Hb_000417_140--Hb_000535_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0691316 0.344055 1.60846 1.53842 0.083734 0.0138687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0539975 0.680829 0.210719

CAGE analysis