Hb_000996_040

Information

Type -
Description -
Location Contig996: 39474-42261
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12500g
description POPTRDRAFT_757485; hypothetical protein
nr
ID XP_002304487.2
description hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
swissprot
ID B0X1Q4
description O-glucosyltransferase rumi homolog OS=Culex quinquefasciatus GN=CPIJ013394 PE=3 SV=1
trembl
ID B9GWG5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s12500g PE=4 SV=2
Gene Ontology
ID GO:0005768
description o-glucosyltransferase rumi homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64830: 39430-42235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_040 0.0 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
2 Hb_000862_050 0.1117578825 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
3 Hb_002639_050 0.1160136575 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_000316_060 0.1160945713 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
5 Hb_001195_550 0.1169349805 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
6 Hb_000395_120 0.1187321126 - - Stellacyanin, putative [Ricinus communis]
7 Hb_000809_130 0.1233040109 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
8 Hb_008725_100 0.1258509668 - - PREDICTED: histone H1-like [Jatropha curcas]
9 Hb_000878_120 0.128517192 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
10 Hb_003573_050 0.1311314618 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_002817_030 0.133088327 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
12 Hb_003747_250 0.1333960721 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
13 Hb_003055_080 0.1338601368 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
14 Hb_006120_130 0.1339149749 - - -
15 Hb_001571_080 0.1363378125 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
16 Hb_002301_400 0.1370974177 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_001159_090 0.1374415478 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
18 Hb_015037_010 0.1381152666 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
19 Hb_004223_080 0.1383585969 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_007237_020 0.1413731682 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]

Gene co-expression network

sample Hb_000996_040 Hb_000996_040 Hb_000862_050 Hb_000862_050 Hb_000996_040--Hb_000862_050 Hb_002639_050 Hb_002639_050 Hb_000996_040--Hb_002639_050 Hb_000316_060 Hb_000316_060 Hb_000996_040--Hb_000316_060 Hb_001195_550 Hb_001195_550 Hb_000996_040--Hb_001195_550 Hb_000395_120 Hb_000395_120 Hb_000996_040--Hb_000395_120 Hb_000809_130 Hb_000809_130 Hb_000996_040--Hb_000809_130 Hb_008725_100 Hb_008725_100 Hb_000862_050--Hb_008725_100 Hb_000592_100 Hb_000592_100 Hb_000862_050--Hb_000592_100 Hb_004005_060 Hb_004005_060 Hb_000862_050--Hb_004005_060 Hb_006120_130 Hb_006120_130 Hb_000862_050--Hb_006120_130 Hb_006810_040 Hb_006810_040 Hb_000862_050--Hb_006810_040 Hb_007126_010 Hb_007126_010 Hb_000862_050--Hb_007126_010 Hb_002639_050--Hb_001195_550 Hb_001054_040 Hb_001054_040 Hb_002639_050--Hb_001054_040 Hb_002301_400 Hb_002301_400 Hb_002639_050--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_002639_050--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002639_050--Hb_006196_030 Hb_000300_190 Hb_000300_190 Hb_002639_050--Hb_000300_190 Hb_003687_040 Hb_003687_040 Hb_000316_060--Hb_003687_040 Hb_001040_080 Hb_001040_080 Hb_000316_060--Hb_001040_080 Hb_007590_110 Hb_007590_110 Hb_000316_060--Hb_007590_110 Hb_001019_160 Hb_001019_160 Hb_000316_060--Hb_001019_160 Hb_002897_010 Hb_002897_010 Hb_000316_060--Hb_002897_010 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_070498_010 Hb_070498_010 Hb_001195_550--Hb_070498_010 Hb_001195_550--Hb_002301_400 Hb_001195_550--Hb_001159_090 Hb_004223_080 Hb_004223_080 Hb_000395_120--Hb_004223_080 Hb_004316_020 Hb_004316_020 Hb_000395_120--Hb_004316_020 Hb_000193_060 Hb_000193_060 Hb_000395_120--Hb_000193_060 Hb_000395_120--Hb_000809_130 Hb_000392_170 Hb_000392_170 Hb_000395_120--Hb_000392_170 Hb_000809_130--Hb_004223_080 Hb_000103_370 Hb_000103_370 Hb_000809_130--Hb_000103_370 Hb_000809_130--Hb_006196_030 Hb_000905_100 Hb_000905_100 Hb_000809_130--Hb_000905_100 Hb_000002_370 Hb_000002_370 Hb_000809_130--Hb_000002_370 Hb_000809_130--Hb_002301_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.260754 3.09764 10.4815 7.74149 0.0678156 0.254309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.77721 1.99328

CAGE analysis