Hb_000395_120

Information

Type -
Description -
Location Contig395: 141482-142283
Sequence    

Annotation

kegg
ID rcu:RCOM_1313080
description Stellacyanin, putative
nr
ID XP_002518894.1
description Stellacyanin, putative [Ricinus communis]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9RYS5
description Stellacyanin, putative OS=Ricinus communis GN=RCOM_1313080 PE=4 SV=1
Gene Ontology
ID GO:0031225
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39510: 140368-140563 , PASA_asmbl_39511: 142048-142271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_120 0.0 - - Stellacyanin, putative [Ricinus communis]
2 Hb_000996_040 0.1187321126 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
3 Hb_004223_080 0.1264568356 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_004316_020 0.1291132421 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
5 Hb_000193_060 0.1310239765 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
6 Hb_000809_130 0.1322431231 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
7 Hb_000392_170 0.1324169201 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
8 Hb_000200_270 0.1360262793 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
9 Hb_015037_010 0.1397290719 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
10 Hb_001638_120 0.1399749524 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
11 Hb_004712_090 0.1400939314 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
12 Hb_006060_010 0.1413727193 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
13 Hb_008250_020 0.142379825 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
14 Hb_002311_500 0.1435974113 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
15 Hb_001571_080 0.1462342456 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
16 Hb_004567_070 0.1514777268 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002200_020 0.1520141443 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
18 Hb_001085_160 0.1526551029 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
19 Hb_000856_230 0.1590444382 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
20 Hb_001541_190 0.1610261033 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]

Gene co-expression network

sample Hb_000395_120 Hb_000395_120 Hb_000996_040 Hb_000996_040 Hb_000395_120--Hb_000996_040 Hb_004223_080 Hb_004223_080 Hb_000395_120--Hb_004223_080 Hb_004316_020 Hb_004316_020 Hb_000395_120--Hb_004316_020 Hb_000193_060 Hb_000193_060 Hb_000395_120--Hb_000193_060 Hb_000809_130 Hb_000809_130 Hb_000395_120--Hb_000809_130 Hb_000392_170 Hb_000392_170 Hb_000395_120--Hb_000392_170 Hb_000862_050 Hb_000862_050 Hb_000996_040--Hb_000862_050 Hb_002639_050 Hb_002639_050 Hb_000996_040--Hb_002639_050 Hb_000316_060 Hb_000316_060 Hb_000996_040--Hb_000316_060 Hb_001195_550 Hb_001195_550 Hb_000996_040--Hb_001195_550 Hb_000996_040--Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_001025_140 Hb_001025_140 Hb_004223_080--Hb_001025_140 Hb_004223_080--Hb_000392_170 Hb_000349_250 Hb_000349_250 Hb_004223_080--Hb_000349_250 Hb_001307_020 Hb_001307_020 Hb_004223_080--Hb_001307_020 Hb_006873_010 Hb_006873_010 Hb_004316_020--Hb_006873_010 Hb_004316_020--Hb_000392_170 Hb_003502_040 Hb_003502_040 Hb_004316_020--Hb_003502_040 Hb_003248_030 Hb_003248_030 Hb_004316_020--Hb_003248_030 Hb_003207_210 Hb_003207_210 Hb_004316_020--Hb_003207_210 Hb_164337_010 Hb_164337_010 Hb_004316_020--Hb_164337_010 Hb_003119_040 Hb_003119_040 Hb_000193_060--Hb_003119_040 Hb_000878_120 Hb_000878_120 Hb_000193_060--Hb_000878_120 Hb_006060_010 Hb_006060_010 Hb_000193_060--Hb_006060_010 Hb_015037_010 Hb_015037_010 Hb_000193_060--Hb_015037_010 Hb_001377_370 Hb_001377_370 Hb_000193_060--Hb_001377_370 Hb_000103_370 Hb_000103_370 Hb_000809_130--Hb_000103_370 Hb_006196_030 Hb_006196_030 Hb_000809_130--Hb_006196_030 Hb_000905_100 Hb_000905_100 Hb_000809_130--Hb_000905_100 Hb_000809_130--Hb_000002_370 Hb_002301_400 Hb_002301_400 Hb_000809_130--Hb_002301_400 Hb_002311_500 Hb_002311_500 Hb_000392_170--Hb_002311_500 Hb_002200_020 Hb_002200_020 Hb_000392_170--Hb_002200_020 Hb_000856_230 Hb_000856_230 Hb_000392_170--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_000392_170--Hb_000200_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102437 1.19979 4.22351 2.13281 0 0.160977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.270818 0.476518

CAGE analysis