Hb_000193_060

Information

Type -
Description -
Location Contig193: 31900-34123
Sequence    

Annotation

kegg
ID rcu:RCOM_0362700
description hypothetical protein
nr
ID XP_012088491.1
description PREDICTED: F-box protein At4g35930 [Jatropha curcas]
swissprot
ID Q5XF11
description F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1
trembl
ID A0A067JJ36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25374 PE=4 SV=1
Gene Ontology
ID GO:0008234
description f-box protein at4g35930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19221: 31731-32297 , PASA_asmbl_19222: 32390-33896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_060 0.0 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
2 Hb_003119_040 0.119508328 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
3 Hb_000395_120 0.1310239765 - - Stellacyanin, putative [Ricinus communis]
4 Hb_000878_120 0.1397533776 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
5 Hb_006060_010 0.1410806031 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
6 Hb_015037_010 0.1427594854 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
7 Hb_001377_370 0.1437304402 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
8 Hb_006120_130 0.1457885842 - - -
9 Hb_006153_010 0.1462655715 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
10 Hb_002540_100 0.1497152697 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
11 Hb_008250_020 0.1509406423 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
12 Hb_000933_040 0.1527146691 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
13 Hb_000996_040 0.1555233884 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
14 Hb_003032_060 0.158520667 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_005599_010 0.1637211056 - - Protein MLO, putative [Ricinus communis]
16 Hb_007894_100 0.1639642023 - - PREDICTED: uncharacterized protein LOC105632952 [Jatropha curcas]
17 Hb_004316_020 0.1645157973 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
18 Hb_004154_010 0.1650344638 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
19 Hb_000862_050 0.1658682855 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
20 Hb_001430_010 0.1683767636 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_060 Hb_000193_060 Hb_003119_040 Hb_003119_040 Hb_000193_060--Hb_003119_040 Hb_000395_120 Hb_000395_120 Hb_000193_060--Hb_000395_120 Hb_000878_120 Hb_000878_120 Hb_000193_060--Hb_000878_120 Hb_006060_010 Hb_006060_010 Hb_000193_060--Hb_006060_010 Hb_015037_010 Hb_015037_010 Hb_000193_060--Hb_015037_010 Hb_001377_370 Hb_001377_370 Hb_000193_060--Hb_001377_370 Hb_003119_040--Hb_006060_010 Hb_002048_100 Hb_002048_100 Hb_003119_040--Hb_002048_100 Hb_006153_010 Hb_006153_010 Hb_003119_040--Hb_006153_010 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010 Hb_000996_040 Hb_000996_040 Hb_000395_120--Hb_000996_040 Hb_004223_080 Hb_004223_080 Hb_000395_120--Hb_004223_080 Hb_004316_020 Hb_004316_020 Hb_000395_120--Hb_004316_020 Hb_000809_130 Hb_000809_130 Hb_000395_120--Hb_000809_130 Hb_000392_170 Hb_000392_170 Hb_000395_120--Hb_000392_170 Hb_003055_080 Hb_003055_080 Hb_000878_120--Hb_003055_080 Hb_006351_030 Hb_006351_030 Hb_000878_120--Hb_006351_030 Hb_000862_050 Hb_000862_050 Hb_000878_120--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_000878_120--Hb_008725_100 Hb_177195_010 Hb_177195_010 Hb_000878_120--Hb_177195_010 Hb_006120_130 Hb_006120_130 Hb_000878_120--Hb_006120_130 Hb_012753_150 Hb_012753_150 Hb_006060_010--Hb_012753_150 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_013344_010 Hb_013344_010 Hb_006060_010--Hb_013344_010 Hb_001430_010 Hb_001430_010 Hb_015037_010--Hb_001430_010 Hb_002200_020 Hb_002200_020 Hb_015037_010--Hb_002200_020 Hb_070634_010 Hb_070634_010 Hb_015037_010--Hb_070634_010 Hb_015037_010--Hb_000392_170 Hb_008806_040 Hb_008806_040 Hb_015037_010--Hb_008806_040 Hb_006873_010 Hb_006873_010 Hb_015037_010--Hb_006873_010 Hb_000069_650 Hb_000069_650 Hb_001377_370--Hb_000069_650 Hb_012150_040 Hb_012150_040 Hb_001377_370--Hb_012150_040 Hb_001950_090 Hb_001950_090 Hb_001377_370--Hb_001950_090 Hb_000289_020 Hb_000289_020 Hb_001377_370--Hb_000289_020 Hb_002028_270 Hb_002028_270 Hb_001377_370--Hb_002028_270 Hb_000317_120 Hb_000317_120 Hb_001377_370--Hb_000317_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.233869 1.63043 5.92994 4.29301 0.0546668 0.112505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.384 0.211743

CAGE analysis