Hb_006153_010

Information

Type -
Description -
Location Contig6153: 16147-21069
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11220g
description POPTRDRAFT_817290; monocopper oxidase precursor family protein
nr
ID XP_011033926.1
description PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
swissprot
ID Q9SU40
description Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1
trembl
ID B9GVI3
description Monocopper oxidase family protein OS=Populus trichocarpa GN=POPTR_0003s11220g PE=4 SV=1
Gene Ontology
ID GO:0005507
description monocopper oxidase-like protein sku5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51173: 16001-20986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_010 0.0 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
2 Hb_008250_020 0.1294917685 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
3 Hb_003119_040 0.1383505018 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
4 Hb_000878_120 0.1414527459 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
5 Hb_000260_610 0.1432975215 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
6 Hb_000193_060 0.1462655715 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
7 Hb_015037_010 0.1484448642 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
8 Hb_000996_040 0.148610147 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
9 Hb_001235_160 0.153072377 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000316_060 0.1542540699 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
11 Hb_009339_040 0.1545872906 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001430_010 0.1574826581 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
13 Hb_006060_010 0.158208349 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
14 Hb_004712_090 0.1582787149 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
15 Hb_003055_080 0.1628285609 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
16 Hb_003032_060 0.1629665729 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
17 Hb_070634_010 0.1663030651 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_003712_010 0.1679470626 - - protein binding protein, putative [Ricinus communis]
19 Hb_004970_070 0.168606775 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
20 Hb_008725_100 0.1700121269 - - PREDICTED: histone H1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006153_010 Hb_006153_010 Hb_008250_020 Hb_008250_020 Hb_006153_010--Hb_008250_020 Hb_003119_040 Hb_003119_040 Hb_006153_010--Hb_003119_040 Hb_000878_120 Hb_000878_120 Hb_006153_010--Hb_000878_120 Hb_000260_610 Hb_000260_610 Hb_006153_010--Hb_000260_610 Hb_000193_060 Hb_000193_060 Hb_006153_010--Hb_000193_060 Hb_015037_010 Hb_015037_010 Hb_006153_010--Hb_015037_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_001235_160 Hb_001235_160 Hb_008250_020--Hb_001235_160 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050 Hb_003119_040--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_003119_040--Hb_006060_010 Hb_002048_100 Hb_002048_100 Hb_003119_040--Hb_002048_100 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010 Hb_003055_080 Hb_003055_080 Hb_000878_120--Hb_003055_080 Hb_006351_030 Hb_006351_030 Hb_000878_120--Hb_006351_030 Hb_000862_050 Hb_000862_050 Hb_000878_120--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_000878_120--Hb_008725_100 Hb_177195_010 Hb_177195_010 Hb_000878_120--Hb_177195_010 Hb_006120_130 Hb_006120_130 Hb_000878_120--Hb_006120_130 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_000260_610--Hb_006060_010 Hb_007545_110 Hb_007545_110 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_000193_060--Hb_000395_120 Hb_000193_060--Hb_000878_120 Hb_000193_060--Hb_006060_010 Hb_000193_060--Hb_015037_010 Hb_001377_370 Hb_001377_370 Hb_000193_060--Hb_001377_370 Hb_001430_010 Hb_001430_010 Hb_015037_010--Hb_001430_010 Hb_002200_020 Hb_002200_020 Hb_015037_010--Hb_002200_020 Hb_070634_010 Hb_070634_010 Hb_015037_010--Hb_070634_010 Hb_000392_170 Hb_000392_170 Hb_015037_010--Hb_000392_170 Hb_008806_040 Hb_008806_040 Hb_015037_010--Hb_008806_040 Hb_006873_010 Hb_006873_010 Hb_015037_010--Hb_006873_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.622057 6.86046 18.0954 12.0533 0.67968 0.296091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111911 0.123277 0.100208 3.77619 1.00512

CAGE analysis