Hb_002681_120

Information

Type -
Description -
Location Contig2681: 89971-92304
Sequence    

Annotation

kegg
ID rcu:RCOM_1065230
description Esterase precursor, putative
nr
ID XP_012071792.1
description PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
swissprot
ID Q9LY84
description GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1
trembl
ID A0A067LPE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10234 PE=4 SV=1
Gene Ontology
ID GO:0009505
description gdsl esterase lipase at5g14450-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27932: 89974-92288
cDNA
(Sanger)
(ID:Location)		 004_P10.ab1: 90924-92040 , 006_H14.ab1: 90984-92040 , 033_E06.ab1: 91185-92040 , 034_D23.ab1: 90919-92037

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_120 0.0 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
2 Hb_003540_120 0.1264584162 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_000363_260 0.1436585022 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
4 Hb_019654_060 0.1444136619 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
5 Hb_001119_070 0.1448438693 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
6 Hb_000581_030 0.1482771088 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003929_190 0.1494187646 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
8 Hb_002592_050 0.1499922176 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
9 Hb_000116_240 0.1514184186 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
10 Hb_000309_030 0.1520092316 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
11 Hb_158092_040 0.1524207394 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
12 Hb_012760_090 0.1525105633 - - Aspartic proteinase-like protein 1 [Morus notabilis]
13 Hb_005485_070 0.1532076784 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
14 Hb_000200_330 0.1533520491 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_005333_080 0.1544648012 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000237_020 0.156640601 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
17 Hb_010050_020 0.1566908953 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
18 Hb_102710_010 0.1612481139 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
19 Hb_012395_050 0.16176372 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_002539_050 0.1620133752 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_120 Hb_002681_120 Hb_003540_120 Hb_003540_120 Hb_002681_120--Hb_003540_120 Hb_000363_260 Hb_000363_260 Hb_002681_120--Hb_000363_260 Hb_019654_060 Hb_019654_060 Hb_002681_120--Hb_019654_060 Hb_001119_070 Hb_001119_070 Hb_002681_120--Hb_001119_070 Hb_000581_030 Hb_000581_030 Hb_002681_120--Hb_000581_030 Hb_003929_190 Hb_003929_190 Hb_002681_120--Hb_003929_190 Hb_030685_010 Hb_030685_010 Hb_003540_120--Hb_030685_010 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_001188_050 Hb_001188_050 Hb_003540_120--Hb_001188_050 Hb_001823_090 Hb_001823_090 Hb_003540_120--Hb_001823_090 Hb_002774_120 Hb_002774_120 Hb_000363_260--Hb_002774_120 Hb_000363_260--Hb_001119_070 Hb_001450_040 Hb_001450_040 Hb_000363_260--Hb_001450_040 Hb_000363_260--Hb_003929_190 Hb_000077_100 Hb_000077_100 Hb_000363_260--Hb_000077_100 Hb_000003_030 Hb_000003_030 Hb_019654_060--Hb_000003_030 Hb_004032_210 Hb_004032_210 Hb_019654_060--Hb_004032_210 Hb_011214_110 Hb_011214_110 Hb_019654_060--Hb_011214_110 Hb_019654_060--Hb_000581_030 Hb_002942_230 Hb_002942_230 Hb_019654_060--Hb_002942_230 Hb_008025_010 Hb_008025_010 Hb_019654_060--Hb_008025_010 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_006615_230 Hb_006615_230 Hb_001119_070--Hb_006615_230 Hb_158092_040 Hb_158092_040 Hb_001119_070--Hb_158092_040 Hb_000806_130 Hb_000806_130 Hb_001119_070--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001119_070--Hb_000696_070 Hb_189003_070 Hb_189003_070 Hb_001119_070--Hb_189003_070 Hb_000581_030--Hb_000003_030 Hb_000940_210 Hb_000940_210 Hb_000581_030--Hb_000940_210 Hb_000237_020 Hb_000237_020 Hb_000581_030--Hb_000237_020 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59562 15.2027 62.696 124.405 11.2349 9.85235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.74971 1.86408 2.00332 59.1136 38.3001

CAGE analysis