Hb_002539_050

Information

Type -
Description -
Location Contig2539: 31186-33344
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16640g
description POPTRDRAFT_822264; glycosyl hydrolase family protein
nr
ID XP_012067766.1
description PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID A0A067KYM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15703 PE=4 SV=1
Gene Ontology
ID GO:0004673
description plasmodesmata callose-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26507: 31173-33385 , PASA_asmbl_26508: 32068-32357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_050 0.0 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
2 Hb_186247_010 0.1032117499 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
3 Hb_003929_190 0.1212443978 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
4 Hb_000363_180 0.1255421795 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
5 Hb_010315_100 0.1272484281 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
6 Hb_148346_010 0.1273064265 - - -
7 Hb_004631_170 0.129111963 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001221_390 0.1310939115 - - Phospholipase C 4 precursor, putative [Ricinus communis]
9 Hb_010050_020 0.1330206329 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
10 Hb_000012_400 0.1332283985 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
11 Hb_150440_010 0.13752703 - - -
12 Hb_001195_420 0.1385734254 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
13 Hb_012760_090 0.1388838319 - - Aspartic proteinase-like protein 1 [Morus notabilis]
14 Hb_002235_370 0.1391979192 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
15 Hb_005724_040 0.1421212399 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
16 Hb_000032_430 0.1442508222 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003430_080 0.1443267464 - - zinc finger protein, putative [Ricinus communis]
18 Hb_001882_150 0.1452602596 transcription factor TF Family: mTERF -
19 Hb_007483_120 0.1464933915 - - 60S ribosomal protein L32A [Hevea brasiliensis]
20 Hb_000196_010 0.1466448119 - - Patellin-5, putative [Ricinus communis]

Gene co-expression network

sample Hb_002539_050 Hb_002539_050 Hb_186247_010 Hb_186247_010 Hb_002539_050--Hb_186247_010 Hb_003929_190 Hb_003929_190 Hb_002539_050--Hb_003929_190 Hb_000363_180 Hb_000363_180 Hb_002539_050--Hb_000363_180 Hb_010315_100 Hb_010315_100 Hb_002539_050--Hb_010315_100 Hb_148346_010 Hb_148346_010 Hb_002539_050--Hb_148346_010 Hb_004631_170 Hb_004631_170 Hb_002539_050--Hb_004631_170 Hb_001188_050 Hb_001188_050 Hb_186247_010--Hb_001188_050 Hb_006829_070 Hb_006829_070 Hb_186247_010--Hb_006829_070 Hb_186247_010--Hb_010315_100 Hb_186247_010--Hb_004631_170 Hb_002026_020 Hb_002026_020 Hb_186247_010--Hb_002026_020 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_000196_010 Hb_000196_010 Hb_000363_180--Hb_000196_010 Hb_009745_010 Hb_009745_010 Hb_000363_180--Hb_009745_010 Hb_000732_230 Hb_000732_230 Hb_000363_180--Hb_000732_230 Hb_000950_040 Hb_000950_040 Hb_000363_180--Hb_000950_040 Hb_001195_420 Hb_001195_420 Hb_000363_180--Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_000363_180--Hb_001009_150 Hb_010315_100--Hb_000363_180 Hb_002235_370 Hb_002235_370 Hb_010315_100--Hb_002235_370 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_010315_100--Hb_000196_010 Hb_004678_030 Hb_004678_030 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_148346_010--Hb_010315_100 Hb_000003_740 Hb_000003_740 Hb_148346_010--Hb_000003_740 Hb_001882_150 Hb_001882_150 Hb_148346_010--Hb_001882_150 Hb_150440_010 Hb_150440_010 Hb_004631_170--Hb_150440_010 Hb_004631_170--Hb_006829_070 Hb_000424_030 Hb_000424_030 Hb_004631_170--Hb_000424_030 Hb_004631_170--Hb_002026_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.73077 53.0641 69.3677 135.448 14.0078 13.0365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96686 1.87889 1.49467 41.4026 35.4666

CAGE analysis