Hb_000654_050

Information

Type -
Description -
Location Contig654: 105559-106869
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07810g
description POPTRDRAFT_558545; hypothetical protein
nr
ID XP_002307092.2
description hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H535
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07810g PE=4 SV=2
Gene Ontology
ID GO:0005794
description mediator of rna polymerase ii transcription subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52627: 105345-106969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000654_050 0.0 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
2 Hb_004678_030 0.069455009 - - fructokinase [Manihot esculenta]
3 Hb_012308_050 0.103133365 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
4 Hb_002463_050 0.1246636687 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000320_270 0.1308489926 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
6 Hb_000061_310 0.131905235 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
7 Hb_001054_040 0.1349797387 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
8 Hb_148346_010 0.1358597486 - - -
9 Hb_001675_310 0.1372625926 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
10 Hb_002897_010 0.1380837314 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
11 Hb_000027_170 0.1382241444 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
12 Hb_007483_120 0.1386116073 - - 60S ribosomal protein L32A [Hevea brasiliensis]
13 Hb_002235_370 0.1400874689 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
14 Hb_000320_450 0.1416619053 - - secretory peroxidase [Hevea brasiliensis]
15 Hb_011671_280 0.1442630574 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
16 Hb_005245_140 0.1443125569 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
17 Hb_002849_180 0.1444991275 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
18 Hb_002609_290 0.1483411398 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
19 Hb_003687_040 0.1488510878 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
20 Hb_000366_050 0.149574645 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000654_050 Hb_000654_050 Hb_004678_030 Hb_004678_030 Hb_000654_050--Hb_004678_030 Hb_012308_050 Hb_012308_050 Hb_000654_050--Hb_012308_050 Hb_002463_050 Hb_002463_050 Hb_000654_050--Hb_002463_050 Hb_000320_270 Hb_000320_270 Hb_000654_050--Hb_000320_270 Hb_000061_310 Hb_000061_310 Hb_000654_050--Hb_000061_310 Hb_001054_040 Hb_001054_040 Hb_000654_050--Hb_001054_040 Hb_000027_170 Hb_000027_170 Hb_004678_030--Hb_000027_170 Hb_004678_030--Hb_002463_050 Hb_001019_160 Hb_001019_160 Hb_004678_030--Hb_001019_160 Hb_004678_030--Hb_000061_310 Hb_005245_140 Hb_005245_140 Hb_004678_030--Hb_005245_140 Hb_007483_120 Hb_007483_120 Hb_012308_050--Hb_007483_120 Hb_002510_100 Hb_002510_100 Hb_012308_050--Hb_002510_100 Hb_002849_180 Hb_002849_180 Hb_012308_050--Hb_002849_180 Hb_005724_040 Hb_005724_040 Hb_012308_050--Hb_005724_040 Hb_012308_050--Hb_000320_270 Hb_002897_010 Hb_002897_010 Hb_002463_050--Hb_002897_010 Hb_003687_040 Hb_003687_040 Hb_002463_050--Hb_003687_040 Hb_000015_150 Hb_000015_150 Hb_002463_050--Hb_000015_150 Hb_002463_050--Hb_000061_310 Hb_001948_090 Hb_001948_090 Hb_000320_270--Hb_001948_090 Hb_005408_100 Hb_005408_100 Hb_000320_270--Hb_005408_100 Hb_000230_470 Hb_000230_470 Hb_000320_270--Hb_000230_470 Hb_001102_200 Hb_001102_200 Hb_000320_270--Hb_001102_200 Hb_003912_080 Hb_003912_080 Hb_000320_270--Hb_003912_080 Hb_000061_310--Hb_003687_040 Hb_000230_360 Hb_000230_360 Hb_000061_310--Hb_000230_360 Hb_031385_010 Hb_031385_010 Hb_000061_310--Hb_031385_010 Hb_000061_310--Hb_001019_160 Hb_001048_100 Hb_001048_100 Hb_000061_310--Hb_001048_100 Hb_002301_370 Hb_002301_370 Hb_000061_310--Hb_002301_370 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002639_050 Hb_002639_050 Hb_001054_040--Hb_002639_050 Hb_002311_280 Hb_002311_280 Hb_001054_040--Hb_002311_280 Hb_003266_090 Hb_003266_090 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_002518_220 Hb_002518_220 Hb_001054_040--Hb_002518_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83829 31.5341 43.7472 48.4458 1.84532 2.82841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.913192 0.488495 0.214736 11.6885 20.4931

CAGE analysis