Hb_002510_100

Information

Type -
Description -
Location Contig2510: 134192-142591
Sequence    

Annotation

kegg
ID rcu:RCOM_0881890
description Root phototropism protein, putative
nr
ID XP_002525040.1
description Root phototropism protein, putative [Ricinus communis]
swissprot
ID Q9FIK1
description BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1
trembl
ID B9SGC1
description Root phototropism protein, putative OS=Ricinus communis GN=RCOM_0881890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26255: 134277-140927 , PASA_asmbl_26256: 134277-140927 , PASA_asmbl_26258: 141118-142388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002510_100 0.0 - - Root phototropism protein, putative [Ricinus communis]
2 Hb_012308_050 0.1013528179 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
3 Hb_000613_250 0.1075413651 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
4 Hb_001013_050 0.1105469913 - - unnamed protein product [Coffea canephora]
5 Hb_003849_200 0.1231416575 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
6 Hb_001048_070 0.1233773182 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
7 Hb_007483_120 0.1297721783 - - 60S ribosomal protein L32A [Hevea brasiliensis]
8 Hb_001675_310 0.1320018937 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
9 Hb_002849_180 0.133260405 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_000069_430 0.1347721392 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
11 Hb_002097_130 0.13750568 - - tonoplast intrinsic protein [Hevea brasiliensis]
12 Hb_000472_020 0.1376258524 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
13 Hb_008092_020 0.1390134303 - - transcription factor, putative [Ricinus communis]
14 Hb_006185_040 0.1394908798 - - PREDICTED: verprolin [Jatropha curcas]
15 Hb_000589_330 0.1411456194 - - kinase, putative [Ricinus communis]
16 Hb_000342_020 0.143203567 - - bel1 homeotic protein, putative [Ricinus communis]
17 Hb_000325_010 0.1447853409 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
18 Hb_006934_020 0.1454346331 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
19 Hb_002235_370 0.1462095134 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
20 Hb_002685_160 0.1470099573 - - leucine-rich repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002510_100 Hb_002510_100 Hb_012308_050 Hb_012308_050 Hb_002510_100--Hb_012308_050 Hb_000613_250 Hb_000613_250 Hb_002510_100--Hb_000613_250 Hb_001013_050 Hb_001013_050 Hb_002510_100--Hb_001013_050 Hb_003849_200 Hb_003849_200 Hb_002510_100--Hb_003849_200 Hb_001048_070 Hb_001048_070 Hb_002510_100--Hb_001048_070 Hb_007483_120 Hb_007483_120 Hb_002510_100--Hb_007483_120 Hb_012308_050--Hb_007483_120 Hb_000654_050 Hb_000654_050 Hb_012308_050--Hb_000654_050 Hb_002849_180 Hb_002849_180 Hb_012308_050--Hb_002849_180 Hb_005724_040 Hb_005724_040 Hb_012308_050--Hb_005724_040 Hb_000320_270 Hb_000320_270 Hb_012308_050--Hb_000320_270 Hb_000342_020 Hb_000342_020 Hb_000613_250--Hb_000342_020 Hb_000472_020 Hb_000472_020 Hb_000613_250--Hb_000472_020 Hb_004421_010 Hb_004421_010 Hb_000613_250--Hb_004421_010 Hb_000477_110 Hb_000477_110 Hb_000613_250--Hb_000477_110 Hb_000613_250--Hb_001013_050 Hb_144703_010 Hb_144703_010 Hb_000613_250--Hb_144703_010 Hb_003835_030 Hb_003835_030 Hb_001013_050--Hb_003835_030 Hb_008092_020 Hb_008092_020 Hb_001013_050--Hb_008092_020 Hb_000589_330 Hb_000589_330 Hb_001013_050--Hb_000589_330 Hb_001013_050--Hb_000472_020 Hb_002097_130 Hb_002097_130 Hb_001013_050--Hb_002097_130 Hb_001013_080 Hb_001013_080 Hb_003849_200--Hb_001013_080 Hb_003849_200--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_003849_200--Hb_008725_020 Hb_003435_040 Hb_003435_040 Hb_003849_200--Hb_003435_040 Hb_000210_160 Hb_000210_160 Hb_003849_200--Hb_000210_160 Hb_004634_030 Hb_004634_030 Hb_003849_200--Hb_004634_030 Hb_012787_060 Hb_012787_060 Hb_001048_070--Hb_012787_060 Hb_008021_040 Hb_008021_040 Hb_001048_070--Hb_008021_040 Hb_002888_100 Hb_002888_100 Hb_001048_070--Hb_002888_100 Hb_002641_140 Hb_002641_140 Hb_001048_070--Hb_002641_140 Hb_001048_070--Hb_000342_020 Hb_007483_120--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_007483_120--Hb_000181_230 Hb_002685_160 Hb_002685_160 Hb_007483_120--Hb_002685_160 Hb_000685_020 Hb_000685_020 Hb_007483_120--Hb_000685_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91169 22.2828 13.1041 27.1325 0.881314 0.924004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0181168 0 0 10.469 12.6597

CAGE analysis