Hb_000685_020

Information

Type -
Description -
Location Contig685: 5531-12380
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13950g
description POPTRDRAFT_817412; acyl-coA synthetase family protein
nr
ID XP_012086723.1
description PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
swissprot
ID Q9T0A0
description Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1
trembl
ID A0A067JZ80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20456 PE=4 SV=1
Gene Ontology
ID GO:0003824
description long chain acyl- synthetase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000685_020 0.0 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
2 Hb_002685_160 0.0897236594 - - leucine-rich repeat protein, putative [Ricinus communis]
3 Hb_136033_010 0.1243514433 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]
4 Hb_139461_010 0.1308891827 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
5 Hb_152980_020 0.1362783661 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
6 Hb_007483_120 0.1370718062 - - 60S ribosomal protein L32A [Hevea brasiliensis]
7 Hb_000120_320 0.1398319825 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000181_260 0.1458800309 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
9 Hb_000203_070 0.146721011 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
10 Hb_003656_090 0.1522079095 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
11 Hb_012308_050 0.1548760999 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
12 Hb_002097_080 0.1556653766 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
13 Hb_002510_100 0.1587184542 - - Root phototropism protein, putative [Ricinus communis]
14 Hb_000483_130 0.1593863171 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
15 Hb_008021_040 0.159735678 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
16 Hb_001138_070 0.1609250547 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
17 Hb_001269_400 0.1611740588 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
18 Hb_008175_050 0.1612735739 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
19 Hb_005545_110 0.1615917883 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
20 Hb_000085_380 0.1623454154 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000685_020 Hb_000685_020 Hb_002685_160 Hb_002685_160 Hb_000685_020--Hb_002685_160 Hb_136033_010 Hb_136033_010 Hb_000685_020--Hb_136033_010 Hb_139461_010 Hb_139461_010 Hb_000685_020--Hb_139461_010 Hb_152980_020 Hb_152980_020 Hb_000685_020--Hb_152980_020 Hb_007483_120 Hb_007483_120 Hb_000685_020--Hb_007483_120 Hb_000120_320 Hb_000120_320 Hb_000685_020--Hb_000120_320 Hb_000230_360 Hb_000230_360 Hb_002685_160--Hb_000230_360 Hb_002685_160--Hb_152980_020 Hb_003656_090 Hb_003656_090 Hb_002685_160--Hb_003656_090 Hb_005724_040 Hb_005724_040 Hb_002685_160--Hb_005724_040 Hb_002097_080 Hb_002097_080 Hb_002685_160--Hb_002097_080 Hb_136033_010--Hb_139461_010 Hb_000325_010 Hb_000325_010 Hb_136033_010--Hb_000325_010 Hb_002510_100 Hb_002510_100 Hb_136033_010--Hb_002510_100 Hb_043789_010 Hb_043789_010 Hb_136033_010--Hb_043789_010 Hb_061054_010 Hb_061054_010 Hb_136033_010--Hb_061054_010 Hb_008021_040 Hb_008021_040 Hb_139461_010--Hb_008021_040 Hb_000181_260 Hb_000181_260 Hb_139461_010--Hb_000181_260 Hb_139461_010--Hb_043789_010 Hb_002811_110 Hb_002811_110 Hb_139461_010--Hb_002811_110 Hb_009838_120 Hb_009838_120 Hb_139461_010--Hb_009838_120 Hb_001048_070 Hb_001048_070 Hb_139461_010--Hb_001048_070 Hb_005545_110 Hb_005545_110 Hb_152980_020--Hb_005545_110 Hb_144449_010 Hb_144449_010 Hb_152980_020--Hb_144449_010 Hb_001269_400 Hb_001269_400 Hb_152980_020--Hb_001269_400 Hb_014361_040 Hb_014361_040 Hb_152980_020--Hb_014361_040 Hb_010222_040 Hb_010222_040 Hb_152980_020--Hb_010222_040 Hb_012308_050 Hb_012308_050 Hb_007483_120--Hb_012308_050 Hb_007483_120--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_007483_120--Hb_000181_230 Hb_007483_120--Hb_002510_100 Hb_007483_120--Hb_002685_160 Hb_149055_010 Hb_149055_010 Hb_000120_320--Hb_149055_010 Hb_000120_320--Hb_000181_260 Hb_001677_090 Hb_001677_090 Hb_000120_320--Hb_001677_090 Hb_002641_140 Hb_002641_140 Hb_000120_320--Hb_002641_140 Hb_019026_050 Hb_019026_050 Hb_000120_320--Hb_019026_050 Hb_001138_070 Hb_001138_070 Hb_000120_320--Hb_001138_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112695 0.598921 0.719342 1.6382 0.00832281 0.149522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.770539 0.740843

CAGE analysis