Hb_136033_010

Information

Type -
Description -
Location Contig136033: 16-564
Sequence    

Annotation

kegg
ID tcc:TCM_042495
description CRINKLY4 related 3, putative
nr
ID XP_012465468.1
description PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID A0A0D2W1W4
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G018100 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136033_010 0.0 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]
2 Hb_000685_020 0.1243514433 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
3 Hb_139461_010 0.1360559115 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
4 Hb_000325_010 0.1499081083 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
5 Hb_002510_100 0.1519070124 - - Root phototropism protein, putative [Ricinus communis]
6 Hb_043789_010 0.1520733314 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
7 Hb_061054_010 0.1534177991 - - hypothetical protein JCGZ_01675 [Jatropha curcas]
8 Hb_000181_260 0.1555181388 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
9 Hb_000483_130 0.1557568107 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
10 Hb_001048_070 0.1641690066 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
11 Hb_106136_010 0.1667848253 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_002685_160 0.1691811667 - - leucine-rich repeat protein, putative [Ricinus communis]
13 Hb_006153_130 0.171448702 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_002811_110 0.1719956979 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
15 Hb_012727_010 0.1726623064 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_014361_040 0.1748297381 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_007625_030 0.1764673338 - - unknown [Medicago truncatula]
18 Hb_016564_060 0.1767948057 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
19 Hb_012308_050 0.1777073695 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
20 Hb_002097_080 0.1778119728 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_136033_010 Hb_136033_010 Hb_000685_020 Hb_000685_020 Hb_136033_010--Hb_000685_020 Hb_139461_010 Hb_139461_010 Hb_136033_010--Hb_139461_010 Hb_000325_010 Hb_000325_010 Hb_136033_010--Hb_000325_010 Hb_002510_100 Hb_002510_100 Hb_136033_010--Hb_002510_100 Hb_043789_010 Hb_043789_010 Hb_136033_010--Hb_043789_010 Hb_061054_010 Hb_061054_010 Hb_136033_010--Hb_061054_010 Hb_002685_160 Hb_002685_160 Hb_000685_020--Hb_002685_160 Hb_000685_020--Hb_139461_010 Hb_152980_020 Hb_152980_020 Hb_000685_020--Hb_152980_020 Hb_007483_120 Hb_007483_120 Hb_000685_020--Hb_007483_120 Hb_000120_320 Hb_000120_320 Hb_000685_020--Hb_000120_320 Hb_008021_040 Hb_008021_040 Hb_139461_010--Hb_008021_040 Hb_000181_260 Hb_000181_260 Hb_139461_010--Hb_000181_260 Hb_139461_010--Hb_043789_010 Hb_002811_110 Hb_002811_110 Hb_139461_010--Hb_002811_110 Hb_009838_120 Hb_009838_120 Hb_139461_010--Hb_009838_120 Hb_001048_070 Hb_001048_070 Hb_139461_010--Hb_001048_070 Hb_002477_080 Hb_002477_080 Hb_000325_010--Hb_002477_080 Hb_000816_050 Hb_000816_050 Hb_000325_010--Hb_000816_050 Hb_014361_040 Hb_014361_040 Hb_000325_010--Hb_014361_040 Hb_008092_020 Hb_008092_020 Hb_000325_010--Hb_008092_020 Hb_135720_010 Hb_135720_010 Hb_000325_010--Hb_135720_010 Hb_001728_130 Hb_001728_130 Hb_000325_010--Hb_001728_130 Hb_012308_050 Hb_012308_050 Hb_002510_100--Hb_012308_050 Hb_000613_250 Hb_000613_250 Hb_002510_100--Hb_000613_250 Hb_001013_050 Hb_001013_050 Hb_002510_100--Hb_001013_050 Hb_003849_200 Hb_003849_200 Hb_002510_100--Hb_003849_200 Hb_002510_100--Hb_001048_070 Hb_002510_100--Hb_007483_120 Hb_043789_010--Hb_002811_110 Hb_043789_010--Hb_008021_040 Hb_004659_100 Hb_004659_100 Hb_043789_010--Hb_004659_100 Hb_000571_060 Hb_000571_060 Hb_043789_010--Hb_000571_060 Hb_043789_010--Hb_001048_070 Hb_002627_010 Hb_002627_010 Hb_061054_010--Hb_002627_010 Hb_000028_550 Hb_000028_550 Hb_061054_010--Hb_000028_550 Hb_061054_010--Hb_139461_010 Hb_002749_040 Hb_002749_040 Hb_061054_010--Hb_002749_040 Hb_061054_010--Hb_000181_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.654259 6.60236 3.43791 12.4518 0 1.39617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.75814 3.46146

CAGE analysis